[Home] | [Total List]

[185484_at]

Description F52C6.10 /REP_DB=WormBase Gene ID /WP=CE10820 /TR=O44817 /GB=AAB94976.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_total > 88      4grp_total > 02      6grp_cgc > 59      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 59.6
(-3)
P 		59.8
(-3)
P 		62.9
(-2.4)
P 		91
(3)
P 		31
B 57.3
(-2.6)
P 		54.9
(-3)
P 		57.6
(-2.6)
P 		95.3
(3)
P 		40
C 63.1
(-2.9)
P 		64.2
(-2.8)
P 		61.8
(-3)
P 		123.4
(3)
P 		62
avr 60
(-2.9) 		59.6
(-3) 		60.8
(-2.8) 		103.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 75
(-1.3)
M 		43
(-3)
P 		56.4
(-2.3)
P 		69.7
(-1.5)
P 		132.3
(1.9)
P 		153.4
(3)
P 		110
B 51.6
(-2.9)
P 		50
(-3)
P 		84.6
(-0.7)
P 		63.1
(-2.1)
P 		120.3
(1.7)
P 		140.3
(3)
P 		90
C 33.9
(-3)
P 		48.1
(-2.5)
P 		89.4
(-1)
P 		36.9
(-2.9)
A 		82.7
(-1.3)
P 		201.8
(3)
P 		168
avr 53.5
(-2.7) 		47
(-3) 		76.8
(-1.5) 		56.6
(-2.5) 		111.8
(0.3) 		165.2
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 21.7
(3)
P 		13
(-3)
P 		16.4
(-0.7)
P 		13.3
(-2.8)
P 		9
B 18.3
(1.3)
P 		13.6
(-2.7)
P 		13.3
(-3)
P 		20.3
(3)
P 		7
C 20.9
(1.7)
P 		18.4
(-3)
P 		21.6
(3)
P 		20.8
(1.5)
P 		3
avr 20.3
(3) 		15
(-3) 		17.1
(-0.6) 		18.1
(0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 13.8
(-2.7)
M 		15.3
(-2.3)
P 		12.3
(-3)
P 		17.7
(-1.8)
P 		39.9
(3)
P 		37.3
(2.4)
P 		28
B 18
(-2.8)
P 		16.6
(-3)
P 		20.5
(-2.3)
P 		16.7
(-3)
P 		48.9
(2.4)
P 		52.3
(3)
P 		36
C 12.6
(-2.5)
P 		14.7
(-2.3)
P 		22.7
(-1.5)
P 		7.4
(-3)
A 		26.8
(-1.1)
P 		67.6
(3)
P 		60
avr 14.8
(-2.9) 		15.5
(-2.8) 		18.5
(-2.3) 		13.9
(-3) 		38.5
(0.8) 		52.4
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4079
Sequence Type Exemplar sequence
Representative Public ID F52C6.10 NCBI
Target Description F52C6.10 /REP_DB=WormBase Gene ID /WP=CE10820 /TR=O44817 /GB=AAB94976.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061723 NCBI Caenorhabditis elegans F52C6.10 (F52C6.10) mRNA, complete cds. 11/11 None
SNAP00000005722 ENSEMBL cdna:SNAP chromosome:CEL140:II:1920018:1921106:-1 11/11 None
GENEFINDER00000005731 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1920018:1921106:-1 11/11 None
F52C6.10 ENSEMBL cdna:known chromosome:CEL140:II:1920018:1921106:-1 gene:F52C6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1920016-1921105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-7
Ensembl F52C6.10
Entrez Gene 186092 Entrez gene
SwissProt O44817 EMBL-EBI
WormBase CE10820 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94976 Hypothetical protein F52C6.10 [Caenorhabditis elegans] ref|NP_494124.1| F52C6.10 [Caenorhabditis elegans] 1.0E-160
blast AAB94976 Hypothetical protein F52C6.10 [Caenorhabditis elegans] ref|NP_494124.1| F52C6.10 [Caenorhabditis elegans] 1.0E-93
blast AAF39859 Hypothetical protein F59H6.11 [Caenorhabditis elegans] ref|NP_494158.1| F59H6.11 [Caenorhabditis elegans] 8.0E-84
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.6E-7
Pfam IPR002083 EMBL-EBI MATH 3.2E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 6.8E-39
Pfam IPR002083 EMBL-EBI MATH 3.8E-40
Pfam IPR000210 EMBL-EBI BTB/POZ domain 6.8E-39
Sequence
Target Sequence 
>C. ELEGANS:185484_AT
aagcggttaccttgttgatgacattattactgttgaagcaacagtgaagatcactaaagt
ttcgaagaaacagctcagaagcttcgataaatcaaataaaaaattctccgacgtgatcct
tgcaattgaagatgaaaaattctatgttctgaaaaagttcctcgcttctcactctaccta
tttcaagactctgctgctcggaaaattcgaagaagctgagagacaagaagtcaaactcca
ggacattgattccacagattttcagaatctcatggaggttctgtatggagaatctgctat
tgatgacggtaccatcaaaggaattcttgaattggccgacatgtacgatatgccttttcc
aattcgaaaatgcgaggaatttctgattgactcgtctgaaaaatcgataaaggagaagct
taaaattgctaagcaatataaaatggagaacttgaagaattcatgcctgtcgaaagtcaa
tactgttcgtgacatcaaagcggcgatgacgggagatccaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGGTTACCTTGTTGATGACATT 608 147 339 Antisense
AAAATTCTCCGACGTGATCCTTGCA 315 133 438 Antisense
CTTCTCACTCTACCTATTTCAAGAC 347 221 503 Antisense
TACCTATTTCAAGACTCTGCTGCTC 545 649 513 Antisense
GAATTCTTGAATTGGCCGACATGTA 303 325 659 Antisense
GGCCGACATGTACGATATGCCTTTT 285 543 672 Antisense
TACGATATGCCTTTTCCAATTCGAA 400 647 682 Antisense
AGGAATTTCTGATTGACTCGTCTGA 367 55 713 Antisense
GAAGAATTCATGCCTGTCGAAAGTC 659 339 792 Antisense
TACTGTTCGTGACATCAAAGCGGCG 361 637 819 Antisense
AGCGGCGATGACGGGAGATCCAACT 55 59 837 Antisense
Sequence Source Affymetrix Proprietary Database