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[185481_at]

Description Y57A10A.7 /REP_DB=WormBase Gene ID /WP=CE22611 /TR=Q9NA85 /GB=CAB55012.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 15.4
(-1.7)
A 		32.2
(3)
A 		10.6
(-3)
A 		22.3
(0.3)
A 		22
B 22.6
(1.6)
A 		28.6
(3)
A 		2.5
(-3)
A 		27
(2.6)
A 		26
C 24.9
(1.1)
A 		34.6
(3)
A 		3.2
(-3)
A 		33.2
(2.7)
P 		31
avr 21
(0.5) 		31.8
(3) 		5.4
(-3) 		27.5
(2) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 31.6
(1.1)
A 		16.1
(-1.1)
A 		2.5
(-3)
A 		21.8
(-0.3)
A 		45
(3)
P 		19.9
(-0.5)
A 		43
B 8.4
(-2.1)
A 		9
(-2)
A 		3.6
(-3)
A 		32.4
(2.5)
P 		34.9
(3)
P 		33.6
(2.8)
A 		31
C 8.1
(-2.4)
A 		9.1
(-2.2)
A 		20.8
(-0.3)
A 		4.6
(-3)
A 		17
(-0.9)
A 		40
(3)
P 		35
avr 16
(-1.2) 		11.4
(-2.4) 		9
(-3) 		19.6
(-0.3) 		32.3
(3) 		31.2
(2.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.6
(1)
A 		7
(3)
A 		2.8
(-3)
A 		3.3
(-2.3)
A 		4
B 7.2
(3)
A 		7.1
(2.9)
A 		0.6
(-3)
A 		5.8
(1.7)
A 		7
C 8.2
(1.8)
A 		10
(3)
A 		1.1
(-3)
A 		5.6
(0)
P 		9
avr 7
(2.1) 		8
(3) 		1.5
(-3) 		4.9
(0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.8
(-0.6)
A 		5.7
(-0.6)
A 		0.5
(-3)
A 		5.5
(-0.7)
A 		13.6
(3)
P 		4.9
(-1)
A 		13
B 2.9
(-2.1)
A 		3
(-2.1)
A 		0.9
(-3)
A 		8.6
(0.5)
P 		14.2
(3)
P 		12.5
(2.2)
A 		13
C 3
(-2)
A 		2.8
(-2.1)
A 		5.3
(-0.9)
A 		0.9
(-3)
A 		5.5
(-0.8)
A 		13.4
(3)
P 		13
avr 3.9
(-1.9) 		3.8
(-1.9) 		2.2
(-3) 		5
(-1.1) 		11.1
(3) 		10.3
(2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4018
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.7 NCBI
Target Description Y57A10A.7 /REP_DB=WormBase Gene ID /WP=CE22611 /TR=Q9NA85 /GB=CAB55012.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064186 NCBI Caenorhabditis elegans Y57A10A.7 (Y57A10A.7) mRNA, complete cds. 11/11 None
SNAP00000026019 ENSEMBL cdna:SNAP chromosome:CEL140:II:12159386:12162562:1 11/11 None
GENEFINDER00000026038 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12159386:12162898:1 11/11 None
Y57A10A.7 ENSEMBL cdna:known chromosome:CEL140:II:12159386:12162562:1 gene:Y57A10A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12159382-12162559(+) 99.64 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.7
Entrez Gene 190335 Entrez gene
SwissProt Q9NA85 EMBL-EBI
WormBase CE22611 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55012 Hypothetical protein Y57A10A.7 [Caenorhabditis elegans] ref|NP_496587.1| Y57A10A.7 [Caenorhabditis elegans] 0.0
blast CAB55010 Hypothetical protein Y57A10A.5 [Caenorhabditis elegans] ref|NP_496585.1| Y57A10A.5 [Caenorhabditis elegans] 1.0E-147
blast CAB07287 Hypothetical protein T28A8.3 [Caenorhabditis elegans] ref|NP_499795.1| T28A8.3 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 6.7E-62
Pfam IPR006570 EMBL-EBI SPK 2.1E-65
Pfam IPR006570 EMBL-EBI SPK 2.3E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026038 3 722-741,748-770,780-802
Sequence
Target Sequence 
>C. ELEGANS:185481_AT
tctttgccaggacttccgaaacctgaaccgattgattttgatttttatcaaatctataat
agagatgtatcacatagtttgaatctcaataatttgcgagaaaataaagaagtcagctgg
aatccgtcaatttctgaaataaaagttgattttacattcttcgaacgtcagcaattcagt
gtacccacgaataatggagccacttcagctgaatcaaagatcataagtttgcatgacttc
ctgaaatccctgatccaattcatttgttttctcgaaagttcggagctcactgagatcaag
cagaaaatcaaagagtcgattagaactgataatgataagttcctgcaaatcaccgacatt
tgtacagtactgcaggcatttttcttcggaatcagtcgcaaattcagattagccgcggcc
gcttctaattccccagctatgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTGCCAGGACTTCCGAAACCTG 386 579 1582 Antisense
GATGTATCACATAGTTTGAATCTCA 653 409 1645 Antisense
TAAAGAAGTCAGCTGGAATCCGTCA 23 641 1686 Antisense
AGTCAGCTGGAATCCGTCAATTTCT 367 61 1692 Antisense
ATAAGTTCCTGCAAATCACCGACAT 457 25 1916 Antisense
TCACCGACATTTGTACAGTACTGCA 120 627 1931 Antisense
GTACTGCAGGCATTTTTCTTCGGAA 355 459 1948 Antisense
GCAGGCATTTTTCTTCGGAATCAGT 208 309 1953 Antisense
CTTCGGAATCAGTCGCAAATTCAGA 36 221 1965 Antisense
CGCAAATTCAGATTAGCCGCGGCCG 36 253 1978 Antisense
CGCTTCTAATTCCCCAGCTATGAAG 510 255 2001 Antisense
Sequence Source Affymetrix Proprietary Database