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[185479_at]

Description F35D11.6 /REP_DB=WormBase Gene ID /WP=CE02719 /TR=Q20032 /GB=AAA68752.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 15.6
(-1.4)
A 		4.1
(-2.8)
A 		2.8
(-3)
A 		52
(3)
P 		49
B 17.4
(1.6)
A 		8.5
(-1.6)
A 		4.5
(-3)
A 		21.3
(3)
A 		17
C 27.9
(-1.8)
P 		24.9
(-2)
A 		8.2
(-3)
A 		104.5
(3)
P 		96
avr 20.3
(-1.3) 		12.5
(-2.2) 		5.2
(-3) 		59.3
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 60.1
(3)
P 		5.2
(-3)
A 		17.2
(-1.7)
A 		20.8
(-1.3)
A 		32.8
(0)
A 		14.7
(-2)
A 		55
B 33.3
(1.8)
A 		40
(3)
P 		30.8
(1.4)
A 		13.5
(-1.6)
A 		5.3
(-3)
A 		26.6
(0.7)
A 		35
C 40
(1.6)
A 		50.7
(3)
A 		4
(-3)
A 		7.8
(-2.5)
A 		7.3
(-2.6)
A 		11.4
(-2)
A 		47
avr 44.5
(3) 		32
(0.5) 		17.3
(-2.4) 		14
(-3) 		15.1
(-2.8) 		17.6
(-2.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.7
(1.3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		7.6
(3)
P 		7
B 5.5
(3)
A 		2.1
(-1.5)
A 		1
(-3)
A 		4.5
(1.7)
A 		5
C 9.2
(-0.4)
P 		7.2
(-1.2)
A 		2.9
(-3)
A 		17.6
(3)
P 		15
avr 6.8
(0.8) 		3.4
(-1.6) 		1.5
(-3) 		9.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.1
(3)
P 		1.9
(-3)
A 		3.8
(-1.8)
A 		5.3
(-0.8)
A 		9.9
(2.2)
A 		3.6
(-1.9)
A 		9
B 11.6
(2.1)
A 		13.3
(3)
P 		7.5
(-0.1)
A 		3.6
(-2.2)
A 		2.1
(-3)
A 		9.9
(1.2)
A 		11
C 14.8
(2.7)
A 		15.5
(3)
A 		1
(-3)
A 		1.6
(-2.8)
A 		2.4
(-2.4)
A 		3.8
(-1.8)
A 		15
avr 12.5
(3) 		10.2
(1.5) 		4.1
(-2.6) 		3.5
(-3) 		4.8
(-2.1) 		5.8
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4111
Sequence Type Exemplar sequence
Representative Public ID F35D11.6 NCBI
Target Description F35D11.6 /REP_DB=WormBase Gene ID /WP=CE02719 /TR=Q20032 /GB=AAA68752.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F35D11.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F35D11.6 F35D11.6 /REP_DB=WormBase Gene ID /WP=CE02719 /TR=Q20032 /GB=AAA68752.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4599976-4600870(+) 73.03 100.0
Sequence
Target Sequence 
>C. ELEGANS:185479_AT
gatgttcatctattttttgctaccaaatcaacgagtacattcaacctttggactgatcga
attaaaaaaaaagatagaaaaaaagatgattttgcaggaaaaaaaagaacaaaaagaaga
agatattattttcccttaccgttggtgtctcgtcgccgtccggtgtacttgttccaattg
gcaatccaacggctgtcggtgtagatacttcagattcgtcctccgtgctttccacaaagt
tctgaaggttttaaatgagagagagagagagatagagagatatgataaaatgattcgtgt
tgggaggagatgtgaattattagaaaaaagtgaaagcaggaatggcgccatcaagaggca
aaattttgcaattttttcgccaaaaactacggtacccggggtctcgacacgacaattttt
tttgttaaatacaacaaacggatgtgcgcctttaaatagactacttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTCATCTATTTTTTGCTACCA 455 409 15 Antisense
GCTACCAAATCAACGAGTACATTCA 16 303 33 Antisense
GTACATTCAACCTTTGGACTGATCG 187 461 49 Antisense
GTCCGGTGTACTTGTTCCAATTGGC 661 475 172 Antisense
TCCAATTGGCAATCCAACGGCTGTC 299 587 187 Antisense
AACGGCTGTCGGTGTAGATACTTCA 387 143 202 Antisense
TGTAGATACTTCAGATTCGTCCTCC 84 561 214 Antisense
CTCCGTGCTTTCCACAAAGTTCTGA 253 235 235 Antisense
GTGAAAGCAGGAATGGCGCCATCAA 19 481 344 Antisense
ACAACAAACGGATGTGCGCCTTTAA 211 111 445 Antisense
GCGCCTTTAAATAGACTACTTCTGA 344 285 460 Antisense
Sequence Source Affymetrix Proprietary Database