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[185478_at]

Description C24H10.3 /REP_DB=WormBase Gene ID /WP=CE04068 /TR=Q18133 /GB=AAA81451.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 33      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 5.6
(-3)
A 		70.1
(0.7)
A 		31.7
(-1.5)
A 		109.8
(3)
A 		104
B 10.6
(-3)
A 		73.3
(3)
A 		42.7
(0.1)
A 		65
(2.2)
A 		63
C 10.7
(-3)
A 		63
(1.3)
A 		83.7
(3)
A 		65.3
(1.5)
A 		73
avr 9
(-3) 		68.8
(2.1) 		52.7
(0.7) 		80
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 87.7
(3)
A 		21.9
(-2.3)
A 		51
(0)
P 		46.4
(-0.3)
A 		47.5
(-0.2)
A 		13.1
(-3)
A 		75
B 40.3
(-0.6)
A 		70.3
(1.5)
M 		90.9
(3)
P 		69.5
(1.5)
A 		48.5
(-0)
A 		6.2
(-3)
A 		85
C 38.3
(-0.8)
A 		81.9
(3)
P 		65.4
(1.6)
P 		77.4
(2.6)
A 		52.6
(0.5)
A 		12.8
(-3)
A 		69
avr 55.4
(1.6) 		58
(1.9) 		69.1
(3) 		64.4
(2.5) 		49.5
(1) 		10.7
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 2
(-3)
A 		15.2
(2.6)
A 		8.3
(-0.3)
A 		16.1
(3)
A 		14
B 3.4
(-3)
A 		18.1
(3)
A 		9.9
(-0.3)
A 		13.9
(1.3)
A 		15
C 3.5
(-3)
A 		18.1
(0.4)
A 		29.2
(3)
A 		11
(-1.2)
A 		26
avr 3
(-3) 		17.1
(3) 		15.8
(2.4) 		13.7
(1.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.2
(3)
A 		7.8
(-0.9)
A 		11.1
(0.6)
P 		11.8
(1)
A 		14.3
(2.1)
A 		3.2
(-3)
A 		13
B 14
(0.3)
A 		23.4
(3)
M 		22.1
(2.6)
P 		18.4
(1.6)
A 		19.7
(1.9)
A 		2.3
(-3)
A 		21
C 14.2
(-0.1)
A 		25
(3)
P 		16.7
(0.6)
P 		15.6
(0.3)
A 		17
(0.7)
A 		4.3
(-3)
A 		21
avr 14.8
(1.5) 		18.7
(3) 		16.6
(2.2) 		15.3
(1.7) 		17
(2.3) 		3.3
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17000
Sequence Type Exemplar sequence
Representative Public ID C24H10.3 NCBI
Target Description C24H10.3 /REP_DB=WormBase Gene ID /WP=CE04068 /TR=Q18133 /GB=AAA81451.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076460 NCBI Caenorhabditis elegans C24H10.3 (C24H10.3) mRNA, complete cds. 11/11 None
C24H10.3 ENSEMBL cdna:known chromosome:CEL140:X:5060621:5061956:1 gene:C24H10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004801 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004807 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5060621-5061957(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H10.3
Entrez Gene 182857 Entrez gene
SwissProt Q18133 EMBL-EBI
WormBase CE04068 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81451 Hypothetical protein C24H10.3 [Caenorhabditis elegans] ref|NP_508861.1| C24H10.3 [Caenorhabditis elegans] 4.0E-75
blast CAE68686 Hypothetical protein CBG14599 [Caenorhabditis briggsae] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:185478_AT
tgtcgtttgccatgatcgctaaagagaatccacggattggcaatgatgaatgcacctacc
tgttgttatctcccttttatcaattccctgccctatccaccgcctttcctctttttaaca
tctttcttttctttcattcacattctttccatgttttgacatcggtttgcgcgaggtgtt
cgcctttatcaactacacaaatgagtatctacgaccgagtaccccttgatattagtgcac
ttgataggctattcgacatacgtgataaggcccttgatgtcaaaagagagctcaccggat
ttgtcagcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGTTTGCCATGATCGCTAAAGA 322 557 20 Antisense
GATGAATGCACCTACCTGTTGTTAT 451 411 64 Antisense
GTTGTTATCTCCCTTTTATCAATTC 599 437 81 Antisense
TTAACATCTTTCTTTTCTTTCATTC 174 685 134 Antisense
TTCTTTCATTCACATTCTTTCCATG 675 689 148 Antisense
GACATCGGTTTGCGCGAGGTGTTCG 606 367 177 Antisense
GGTGTTCGCCTTTATCAACTACACA 693 499 194 Antisense
ATGAGTATCTACGACCGAGTACCCC 612 43 220 Antisense
GTACCCCTTGATATTAGTGCACTTG 61 459 238 Antisense
CGACATACGTGATAAGGCCCTTGAT 314 247 273 Antisense
AGAGCTCACCGGATTTGTCAGCGAA 472 67 306 Antisense
Sequence Source Affymetrix Proprietary Database