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[185477_s_at]

Description AH9.3 /REP_DB=WormBase Gene ID /WP=CE03859 /TR=SW:Q10906 /GB=AAA82441.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      6grp_total > 86      4grp_total > 57      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 102.8
(-1)
P 		145.1
(2.2)
A 		155.5
(3)
P 		77
(-3)
A 		79
B 112.7
(-0)
P 		132.5
(0.9)
A 		177.5
(3)
P 		49.1
(-3)
A 		128
C 100.1
(-3)
P 		157.1
(2.5)
P 		161.9
(3)
P 		133.4
(0.2)
A 		62
avr 105.2
(-1.6) 		144.9
(1.5) 		165
(3) 		86.5
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 167.8
(-2.2)
P 		176.4
(-1.7)
P 		155.8
(-3)
P 		195.9
(-0.5)
P 		250.9
(3)
P 		246.9
(2.7)
P 		95
B 194.8
(-1.2)
P 		165.5
(-3)
P 		195.2
(-1.2)
P 		180.6
(-2.1)
P 		221.5
(0.4)
P 		262.9
(3)
P 		97
C 153.9
(-2.7)
P 		149.6
(-3)
M 		180.2
(-0.9)
P 		233.1
(2.8)
P 		154.8
(-2.6)
P 		236.3
(3)
P 		87
avr 172.2
(-2.4) 		163.8
(-3) 		177.1
(-2.1) 		203.2
(-0.2) 		209.1
(0.2) 		248.7
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 37.4
(2.3)
P 		31.5
(1.1)
A 		40.6
(3)
P 		11.3
(-3)
A 		29
B 35.9
(2)
P 		32.7
(1.4)
A 		41.1
(3)
P 		10.5
(-3)
A 		31
C 33.2
(-1.1)
P 		45.2
(1)
P 		56.4
(3)
P 		22.5
(-3)
A 		34
avr 35.5
(1) 		36.5
(1.2) 		46
(3) 		14.8
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 30.9
(-3)
P 		62.7
(1.3)
P 		33.9
(-2.6)
P 		49.7
(-0.5)
P 		75.7
(3)
P 		60.1
(0.9)
P 		45
B 67.8
(-0.6)
P 		55.1
(-2.1)
P 		47.4
(-3)
P 		47.8
(-3)
P 		90
(2.1)
P 		98
(3)
P 		51
C 57
(-1)
P 		45.7
(-3)
M 		45.9
(-3)
P 		46.9
(-2.8)
P 		50.1
(-2.2)
P 		79.1
(3)
P 		33
avr 51.9
(-1.4) 		54.5
(-1) 		42.4
(-3) 		48.1
(-2.1) 		71.9
(1.8) 		79.1
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185477_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18378
Sequence Type Exemplar sequence
Representative Public ID AH9.3 NCBI
Target Description AH9.3 /REP_DB=WormBase Gene ID /WP=CE03859 /TR=SW:Q10906 /GB=AAA82441.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076015 NCBI Caenorhabditis elegans AH9.3 (AH9.3) mRNA, complete cds. 11/11 None
SNAP00000004861 ENSEMBL cdna:SNAP chromosome:CEL140:X:2259334:2260514:-1 11/11 None
GENEFINDER00000004868 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2259334:2260514:-1 11/11 None
AH9.3 ENSEMBL cdna:known chromosome:CEL140:X:2259162:2267465:-1 gene:AH9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2259333-2267465(-) 96.93 100.0
Public Domain and Genome References
Gene Title
Ensembl AH9.3
Entrez Gene 180537 Entrez gene
SwissProt Q10906 EMBL-EBI
WormBase CE03859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82441 Hypothetical protein AH9.3 [Caenorhabditis elegans] ref|NP_508416.1| AH9.3 [Caenorhabditis elegans] sp|Q10906|YWO3_CAEEL Hypothetical protein AH9.3 in chromosome X 0.0
blast AAA82441 Hypothetical protein AH9.3 [Caenorhabditis elegans] ref|NP_508416.1| AH9.3 [Caenorhabditis elegans] sp|Q10906|YWO3_CAEEL Hypothetical protein AH9.3 in chromosome X 1.0E-123
blast CAE58898 Hypothetical protein CBG02146 [Caenorhabditis briggsae] 2.0E-88
blast CAE58899 Hypothetical protein CBG02149 [Caenorhabditis briggsae] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508416.1 1 221-240
AH9.3 1 221-240
Sequence
Target Sequence 
>C. ELEGANS:185477_S_AT
tacaactgacggcgaggttcctgagaaagattccgccgatgagaatgccgagaaaaatca
agttgactcaatggaaaaccctaaaactgaagaaggcattgtgactgctgatgagaaagt
tgacagttctgatgataacaaaaatgctcaaaaaacggatggagagaagtcacaggttgc
tgaagatgtggcggatgcagaggtgactgagaaaattgggtctggagtaaatgatgaact
ggaaaacgtcgaagaggctgaaaaggaagtgaaaaaggaaggtgatgacgaggaaagtgg
agctcaagatcctgctgtgattcagttgagaaaagaaattgcggcagccatcaacactta
ccaaaaacagtttgacgatctcaatcttactcagcgaatcgcccaaccaggtatctcgga
atacacgcaaatggttatcacaaaaaagttgaacgccagtacagctcatattgatggtta
taaagggaaaattgcaatggccaacactgtcgagcagctacagaatctgttgacagaaat
caaccagcaaatccgtcgtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACTGACGGCGAGGTTCCTGAG 354 639 1098 Antisense
GTTCCTGAGAAAGATTCCGCCGATG 643 441 1114 Antisense
GAAGGCATTGTGACTGCTGATGAGA 596 333 1189 Antisense
GATGTGGCGGATGCAGAGGTGACTG 329 409 1282 Antisense
AAAGTGGAGCTCAAGATCCTGCTGT 426 121 1391 Antisense
GATCCTGCTGTGATTCAGTTGAGAA 78 417 1405 Antisense
AATTGCGGCAGCCATCAACACTTAC 583 173 1434 Antisense
TCGCCCAACCAGGTATCTCGGAATA 426 597 1496 Antisense
GAACGCCAGTACAGCTCATATTGAT 389 345 1548 Antisense
AATGGCCAACACTGTCGAGCAGCTA 611 161 1593 Antisense
AATCAACCAGCAAATCCGTCGTGCC 608 171 1635 Antisense
Sequence Source Affymetrix Proprietary Database