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[185476_at]

Description C07D10.2 /REP_DB=WormBase Gene ID /WP=CE27057 /TR=Q17782 /GB=AAK31400.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 19      6grp_high1_sub > 04      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 400.7
(-1.7)
P 		430.6
(-1)
P 		348.4
(-3)
P 		595.7
(3)
P 		247
B 394.6
(-2.6)
P 		420.6
(-1.9)
P 		378.1
(-3)
P 		601.9
(3)
P 		224
C 453.3
(2.2)
P 		420
(0.7)
P 		339.9
(-3)
P 		471
(3)
P 		131
avr 416.2
(-1.2) 		423.7
(-1) 		355.5
(-3) 		556.2
(3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 390.4
(-2.4)
P 		548.8
(-0.9)
P 		331.1
(-3)
P 		903
(2.5)
P 		958.4
(3)
P 		841.1
(1.9)
P 		627
B 454.8
(-3)
P 		502.6
(-2.5)
P 		472
(-2.8)
P 		797.1
(0.8)
P 		1001.9
(3)
P 		873.9
(1.6)
P 		547
C 508.9
(-2.6)
P 		480.1
(-3)
P 		477.1
(-3)
P 		840.3
(2)
P 		680.2
(-0.2)
P 		908.9
(3)
P 		432
avr 451.4
(-2.7) 		510.5
(-1.9) 		426.7
(-3) 		846.8
(2.6) 		880.2
(3) 		874.6
(2.9) 		454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 145.9
(3)
P 		93.5
(-2.4)
P 		91.1
(-2.6)
P 		87.2
(-3)
P 		59
B 125.8
(2.6)
P 		103.9
(-0.6)
P 		87.6
(-3)
P 		128.3
(3)
P 		41
C 150
(3)
P 		120.8
(0.5)
P 		118.5
(0.3)
P 		79.4
(-3)
P 		71
avr 140.6
(3) 		106.1
(-1.9) 		99.1
(-2.9) 		98.3
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 72
(-3)
P 		195.2
(0.4)
P 		72.1
(-3)
P 		229
(1.3)
P 		289.2
(3)
P 		204.8
(0.7)
P 		217
B 158.3
(-2.1)
P 		167.3
(-1.9)
P 		114.6
(-3)
P 		211.1
(-1)
P 		407
(3)
P 		325.9
(1.3)
P 		292
C 188.6
(-0.8)
P 		146.5
(-2.2)
P 		121.4
(-3)
P 		169
(-1.4)
P 		220.1
(0.2)
P 		304.3
(3)
P 		183
avr 139.6
(-1.9) 		169.7
(-1) 		102.7
(-3) 		203
(-0) 		305.4
(3) 		278.3
(2.2) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4157
Sequence Type Exemplar sequence
Representative Public ID C07D10.2 NCBI
Target Description C07D10.2 /REP_DB=WormBase Gene ID /WP=CE27057 /TR=Q17782 /GB=AAK31400.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063148(11), NM_063149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063148 NCBI Caenorhabditis elegans C07D10.2b (C07D10.2) mRNA, complete cds. 11/11 None
NM_063149 NCBI Caenorhabditis elegans C07D10.2a (C07D10.2) mRNA, complete cds. 11/11 None
SNAP00000000400 ENSEMBL cdna:SNAP chromosome:CEL140:II:7394887:7396574:1 10/11 None
GENEFINDER00000000404 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7394887:7396737:1 11/11 None
C07D10.2b.1 ENSEMBL cdna:known chromosome:CEL140:II:7394882:7397256:1 gene:C07D10.2 11/11 None
C07D10.2b.2 ENSEMBL cdna:known chromosome:CEL140:II:7394884:7397256:1 gene:C07D10.2 11/11 None
C07D10.2a ENSEMBL cdna:known chromosome:CEL140:II:7394884:7396737:1 gene:C07D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7394257-7396734(+) 100.0 100.0
Public Domain and Genome References
Ensembl C07D10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00851 Hypothetical protein C07D10.2b [Caenorhabditis elegans] ref|NP_495549.1| C07D10.2b [Caenorhabditis elegans] 0.0
blast T15442 hypothetical protein C07D10.2 - Caenorhabditis elegans 0.0
blast AAK31400 Hypothetical protein C07D10.2a [Caenorhabditis elegans] ref|NP_495550.1| C07D10.2a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.2E-33
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.2E-33
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.2E-33
Sequence
Target Sequence 
>C. ELEGANS:185476_AT
ctaccaatgccgagtgatgtcaccaaagatctggaaaacttatatcgcagtggaaagcat
gcagattttacattagtcgttgaagaacgtgaattaaaagctcacaaagcaatcctagca
gctcgatctcctgttttcgctgcaatgatggaaccacatacagcagaagcacagaattca
agagccatcctacgagacattgattatgaagttgttcaggcaattctctattacatttac
actggaacctgtacaaatatgggtggaaatgctttagatatattggctgcagctgaacgt
ttcgctttaccaggactaaaaaatattgctgaagtggcaatgagaaacgggctggctacc
gagacagtatgtaagaatctagcgtttgctgaaatgtatggtttggttgacttcaagaag
gaagctatcaagtacatctgtatgaatgcaaatgctgtcataaattctgaaggattcttg
agactttcaagacaaaatcctgatctcattgtggatattatgactgttttggtgaatgag
cgacataattcaccgtcttgcttcagtctcgacggaacattggagccagccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACCAATGCCGAGTGATGTCACCA 654 225 619 Antisense
AAAGCAATCCTAGCAGCTCGATCTC 608 123 724 Antisense
TCTCCTGTTTTCGCTGCAATGATGG 339 611 745 Antisense
GAATTCAAGAGCCATCCTACGAGAC 336 325 792 Antisense
GGCAATTCTCTATTACATTTACACT 232 535 837 Antisense
ATTGGCTGCAGCTGAACGTTTCGCT 594 3 900 Antisense
TGAACGTTTCGCTTTACCAGGACTA 553 573 912 Antisense
GAAACGGGCTGGCTACCGAGACAGT 358 357 962 Antisense
GAGCGACATAATTCACCGTCTTGCT 460 385 1156 Antisense
CGTCTTGCTTCAGTCTCGACGGAAC 280 247 1172 Antisense
GACGGAACATTGGAGCCAGCCAGCA 298 377 1189 Antisense
Sequence Source Affymetrix Proprietary Database