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[185475_at]

Description F08D12.6 /REP_DB=WormBase Gene ID /WP=CE27926 /TR=P91229 /GB=AAK68304.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 27.7
(-1.6)
A 		45.3
(-0)
A 		12.8
(-3)
A 		78
(3)
A 		65
B 20.4
(-1.3)
A 		60.8
(3)
A 		53.9
(2.3)
A 		4.1
(-3)
A 		57
C 24.9
(-2.2)
A 		35
(-1.1)
A 		17.5
(-3)
A 		72.4
(3)
A 		55
avr 24.3
(-3) 		47
(2) 		28.1
(-2.2) 		51.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 26.6
(0.3)
A 		13.3
(-1.6)
A 		46.1
(3)
A 		6.2
(-2.6)
A 		15.1
(-1.4)
A 		3.5
(-3)
A 		43
B 32.3
(1.1)
A 		38.5
(2.1)
A 		7.5
(-3)
A 		44.2
(3)
A 		10.4
(-2.5)
A 		35.5
(1.6)
A 		37
C 56
(3)
A 		36.4
(0.4)
A 		42.3
(1.2)
A 		46.2
(1.7)
A 		16
(-2.3)
A 		10.7
(-3)
A 		45
avr 38.3
(3) 		29.4
(0.8) 		32
(1.5) 		32.2
(1.5) 		13.8
(-3) 		16.6
(-2.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.1
(2)
A 		9.8
(1.8)
A 		3.4
(-3)
A 		11.4
(3)
A 		8
B 6.5
(-0.6)
A 		15
(3)
A 		12.5
(1.9)
A 		0.9
(-3)
A 		14
C 8.2
(-0.9)
A 		10.1
(0.9)
A 		6.1
(-3)
A 		12.2
(3)
A 		6
avr 8.3
(-1.6) 		11.6
(3) 		7.3
(-3) 		8.2
(-1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.9
(-0.3)
A 		4.7
(-0.5)
A 		10
(3)
A 		1.6
(-2.5)
A 		4.6
(-0.5)
A 		0.8
(-3)
A 		9
B 11.2
(1.9)
A 		12.8
(2.8)
A 		1.8
(-3)
A 		11.7
(2.2)
A 		4.2
(-1.7)
A 		13.2
(3)
A 		11
C 20.8
(3)
A 		11.1
(-0.4)
A 		10.8
(-0.5)
A 		9.3
(-1)
A 		5.2
(-2.4)
A 		3.6
(-3)
A 		17
avr 12.3
(3) 		9.5
(0.8) 		7.5
(-0.8) 		7.5
(-0.8) 		4.7
(-3) 		5.9
(-2.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4110
Sequence Type Exemplar sequence
Representative Public ID F08D12.6 NCBI
Target Description F08D12.6 /REP_DB=WormBase Gene ID /WP=CE27926 /TR=P91229 /GB=AAK68304.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061954
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023713 ENSEMBL cdna:SNAP chromosome:CEL140:II:2765679:2769090:1 None
F08D12.6 ENSEMBL cdna:known chromosome:CEL140:II:2764969:2767230:1 gene:F08D12.6 None
NM_061954 NCBI Caenorhabditis elegans F08D12.6 (F08D12.6) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2764967-2768591(+) 79.14 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.6
Entrez Gene 184177 Entrez gene
SwissProt P91229 EMBL-EBI
WormBase CE27926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68304 Hypothetical protein F08D12.6 [Caenorhabditis elegans] ref|NP_494355.1| F08D12.6 [Caenorhabditis elegans] 0.0
blast T25674 hypothetical protein F08D12.6 - Caenorhabditis elegans 0.0
blast AAK68304 Hypothetical protein F08D12.6 [Caenorhabditis elegans] ref|NP_494355.1| F08D12.6 [Caenorhabditis elegans] 1.0E-110
blast T25674 hypothetical protein F08D12.6 - Caenorhabditis elegans 3.0E-97
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185475_AT
cggcacaaactgccgatttgccgacttgccgaaaattcgagcaatttgccgatttgccgg
aaatcttcaattccaacgattttccgggttgccagaaatgttcaatttaagcaatttgcc
gttttgccggaaattttcaataatttgccaatttgtcgatttgccggaaatttcaattgc
gccaatttgcccacttcccgaaatttttccgttttttccggcaaattcggcaaattatca
agttgcggaatttgccgattttccggaaattttcaatggtgtataccacaatcaacgcta
aaatcttgcctctgcatcctcaaaaagctgcagaaactccaccaaattcgtgtcattcga
ctgtacgtctacccagttgatctcccgctccttcgccacaataccactttccagagcttc
acactgaagtttattgaacgcatggtgcagtctattgcagttgtcctgaaagcctcccgg
cacagttgtgagcacattaatcaggttgtcatagttgaagttggagctcaggatggctac
agtctcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCACAAACTGCCGATTTGCCGAC 186 241 1873 Antisense
TTCCAACGATTTTCCGGGTTGCCAG 583 681 1943 Antisense
TTCAATTGCGCCAATTTGCCCACTT 243 685 2044 Antisense
GTGTATACCACAATCAACGCTAAAA 507 485 2151 Antisense
ACGCTAAAATCTTGCCTCTGCATCC 41 93 2167 Antisense
GAAACTCCACCAAATTCGTGTCATT 626 357 2205 Antisense
TGTCATTCGACTGTACGTCTACCCA 190 559 2223 Antisense
CCACTTTCCAGAGCTTCACACTGAA 240 275 2276 Antisense
ATTGCAGTTGTCCTGAAAGCCTCCC 448 3 2326 Antisense
CTCCCGGCACAGTTGTGAGCACATT 71 235 2346 Antisense
AGCTCAGGATGGCTACAGTCTCCTC 1 79 2397 Antisense
Sequence Source Affymetrix Proprietary Database