[Home] | [Total List]

[185474_at]

Description T05B11.1 /REP_DB=WormBase Gene ID /WP=CE07464 /TR=Q22212 /GB=AAB37066.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 81      4grp_total > 61      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 243.1
(3)
A 		189.1
(-3)
A 		203
(-1.5)
A 		205.2
(-1.2)
A 		54
B 212.8
(1.8)
P 		187.4
(-0.1)
A 		228.5
(3)
M 		148.2
(-3)
A 		80
C 220.4
(-3)
P 		268.1
(3)
A 		225.5
(-2.4)
A 		226.2
(-2.3)
P 		48
avr 225.4
(3) 		214.9
(1) 		219
(1.8) 		193.2
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 202
(-2.8)
A 		261.7
(-0.8)
P 		196.7
(-3)
P 		370.3
(3)
P 		314.9
(1.1)
P 		233.3
(-1.7)
P 		174
B 211.2
(-1.1)
M 		269.7
(0.6)
P 		240.9
(-0.2)
P 		302.1
(1.6)
P 		348.3
(3)
P 		148.5
(-3)
P 		200
C 214.3
(-1.4)
P 		282.6
(0.6)
P 		226.4
(-1)
P 		366.7
(3)
P 		287
(0.7)
P 		158.7
(-3)
P 		208
avr 209.2
(-2) 		271.3
(0.3) 		221.3
(-1.5) 		346.4
(3) 		316.7
(1.9) 		180.2
(-3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 88.5
(3)
A 		41
(-1.9)
A 		53.1
(-0.6)
A 		30
(-3)
A 		59
B 67.8
(3)
P 		46.3
(-0.6)
A 		52.9
(0.5)
M 		31.6
(-3)
A 		36
C 73
(2.2)
P 		77.1
(2.8)
A 		78.6
(3)
A 		38.1
(-3)
P 		41
avr 76.4
(3) 		54.8
(-0) 		61.5
(0.9) 		33.2
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 37.2
(-3)
A 		93.1
(2.8)
P 		42.8
(-2.4)
P 		93.9
(2.9)
P 		95
(3)
P 		56.8
(-1)
P 		58
B 73.5
(-1.7)
M 		89.8
(-0.6)
P 		58.5
(-2.8)
P 		80
(-1.3)
P 		141.5
(3)
P 		55.4
(-3)
P 		86
C 79.4
(1)
P 		86.2
(2)
P 		57.6
(-2.3)
P 		73.7
(0.1)
P 		92.9
(3)
P 		53.1
(-3)
P 		40
avr 63.4
(-1.9) 		89.7
(0.9) 		53
(-3) 		82.5
(0.1) 		109.8
(3) 		55.1
(-2.8) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11502
Sequence Type Exemplar sequence
Representative Public ID T05B11.1 NCBI
Target Description T05B11.1 /REP_DB=WormBase Gene ID /WP=CE07464 /TR=Q22212 /GB=AAB37066.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072600 NCBI Caenorhabditis elegans T05B11.1 (T05B11.1) mRNA, complete cds. 11/11 None
SNAP00000037444 ENSEMBL cdna:SNAP chromosome:CEL140:V:7751456:7753785:1 11/11 None
GENEFINDER00000037446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7751456:7753785:1 11/11 None
T05B11.1 ENSEMBL cdna:known chromosome:CEL140:V:7751456:7753785:1 gene:T05B11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7751456-7753786(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B11.1
Entrez Gene 179151 Entrez gene
SwissProt Q22212 EMBL-EBI
WormBase CE07464 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505001 T05B11.1 [Caenorhabditis elegans] gb|AAB37066.1| Hypothetical protein T05B11.1 [Caenorhabditis elegans] 0.0
blast CAE73195 Hypothetical protein CBG20596 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.4E-8
Sequence
Target Sequence 
>C. ELEGANS:185474_AT
ggaggcgttgagacatgtcaccacgctggcgctgtcactgtgtcatatccgactctcatg
gacacaattcatggacttgctgtctcgaatgaccatcaagcatctatacattgatttctg
cacatttcatccgtcattgatctctgacaaggtgctgatgtctctaactcacttggaaac
aattcaaattcaaccaagatatccttgttttctcaacgaagttactgatcaaacactaat
tcactgggctacacggacaacagcgccaaacacaatccagttcagaaatgggtgtgcaag
tcgaataacagtggatggaattaggcatttaatgactagagcactctcgactgcttcaac
gcctaacaaaatggacttggatttcggacttcttctagaaccatcacagtctgaaacttc
actcctcacttttatcctgtgcccgggacttgatttcaaggtgaccgacgactttcgttc
ccgaaaaatcagtctaagccgtggcaagttctgccttcaatttttcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCGTTGAGACATGTCACCACG 446 515 444 Antisense
GCTGTCACTGTGTCATATCCGACTC 9 295 474 Antisense
GGACTTGCTGTCTCGAATGACCATC 488 525 516 Antisense
TGATTTCTGCACATTTCATCCGTCA 285 565 555 Antisense
TGCTGATGTCTCTAACTCACTTGGA 335 583 596 Antisense
AATTCACTGGGCTACACGGACAACA 58 175 681 Antisense
TGACTAGAGCACTCTCGACTGCTTC 293 571 776 Antisense
TCGACTGCTTCAACGCCTAACAAAA 75 603 790 Antisense
TCACAGTCTGAAACTTCACTCCTCA 10 629 847 Antisense
TCAAGGTGACCGACGACTTTCGTTC 55 629 899 Antisense
AAGTTCTGCCTTCAATTTTTCATTC 319 155 949 Antisense
Sequence Source Affymetrix Proprietary Database