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[185473_at]

Description F28C10.1 /REP_DB=WormBase Gene ID /WP=CE07154 /TR=Q19861 /GB=AAB00610.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 35.5
(-3)
A 		70.6
(2.9)
A 		56.8
(0.5)
A 		71.5
(3)
A 		36
B 14.1
(-3)
A 		50.4
(3)
A 		18.9
(-2.2)
A 		27.8
(-0.7)
A 		36
C 16.6
(-3)
A 		60.3
(0.4)
A 		31.1
(-1.9)
A 		94.2
(3)
A 		78
avr 22.1
(-3) 		60.4
(2.4) 		35.6
(-1.1) 		64.5
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 77.3
(3)
A 		8.6
(-3)
A 		15.7
(-2.4)
A 		31.8
(-1)
A 		49.7
(0.6)
A 		12.3
(-2.7)
A 		69
B 46.6
(3)
A 		30.6
(0.6)
A 		44.4
(2.7)
A 		6
(-3)
A 		27.2
(0.1)
A 		13.7
(-1.9)
A 		41
C 17.4
(-1.2)
A 		31
(0.7)
P 		46.8
(3)
A 		41.7
(2.3)
A 		4.7
(-3)
A 		15.6
(-1.4)
A 		42
avr 47.1
(3) 		23.4
(-1.3) 		35.6
(0.9) 		26.5
(-0.7) 		27.2
(-0.6) 		13.9
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.9
(0)
A 		15.3
(3)
A 		14.8
(2.4)
A 		10.5
(-3)
A 		5
B 4.5
(-2.9)
A 		12.5
(3)
A 		4.4
(-3)
A 		5.9
(-1.9)
A 		8
C 5.5
(-3)
A 		17.3
(3)
A 		10.8
(-0.3)
A 		15.9
(2.3)
A 		12
avr 7.6
(-3) 		15
(3) 		10
(-1.1) 		10.8
(-0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 14.3
(2.7)
A 		3.1
(-3)
A 		3.4
(-2.8)
A 		8.1
(-0.5)
A 		15
(3)
A 		3
(-3)
A 		12
B 16.2
(3)
A 		10.2
(0.5)
A 		10.8
(0.8)
A 		1.6
(-3)
A 		11.1
(0.9)
A 		5.1
(-1.6)
A 		15
C 6.4
(-0.2)
A 		9.5
(1.6)
P 		11.9
(3)
A 		8.4
(1)
A 		1.5
(-3)
A 		5.2
(-0.9)
A 		10
avr 12.3
(3) 		7.6
(-0.6) 		8.7
(0.3) 		6
(-1.8) 		9.2
(0.6) 		4.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18504
Sequence Type Exemplar sequence
Representative Public ID F28C10.1 NCBI
Target Description F28C10.1 /REP_DB=WormBase Gene ID /WP=CE07154 /TR=Q19861 /GB=AAB00610.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075716 NCBI Caenorhabditis elegans F28C10.1 (F28C10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036544 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:543090:544257:1 11/11 None
F28C10.1 ENSEMBL cdna:known chromosome:CEL140:X:543108:544257:1 gene:F28C10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036539 2/11 Cross Hyb Matching Probes None
SNAP00000036540 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:543107-544257(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28C10.1
Entrez Gene 185050 Entrez gene
SwissProt Q19861 EMBL-EBI
WormBase CE07154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00610 Hypothetical protein F28C10.1 [Caenorhabditis elegans] ref|NP_508117.1| F28C10.1 [Caenorhabditis elegans] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:185473_AT
tgaagaagtctgcgagaacccaccaaaagaaatcggtgacgaagaatacgaccaagtcat
cattcaatccatgatggacgaagcgaatagagatcagaaggggtattggatccggttgat
ggaagaaggagatgctcatccagcgcgaaagcaaatgggaaaagtagactttcgtaactt
cctgaacatgcgctacgagagaaccagccgatcgagctgtagcgaaattcaacgactcaa
ccagacttatgattggctccgcgagttccactttggatgggagagagagatctttgtcgt
ctacacccatttcgatcatccggcctcgttcgtcattgagaaactcttcttggaccatat
gaatttatcaatttctgaatttgaagatcagaccagctacacaagcaagacgacttcccg
taacaccaagtacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGAAGTCTGCGAGAACCCACCA 244 575 45 Antisense
ACGACCAAGTCATCATTCAATCCAT 562 91 92 Antisense
TAACTTCCTGAACATGCGCTACGAG 512 639 219 Antisense
GAACCAGCCGATCGAGCTGTAGCGA 61 345 245 Antisense
GCGAAATTCAACGACTCAACCAGAC 396 289 266 Antisense
CAACCAGACTTATGATTGGCTCCGC 337 187 282 Antisense
CTCCGCGAGTTCCACTTTGGATGGG 651 233 301 Antisense
AGAGAGAGATCTTTGTCGTCTACAC 303 69 326 Antisense
CCGGCCTCGTTCGTCATTGAGAAAC 351 265 364 Antisense
GCTACACAAGCAAGACGACTTCCCG 438 301 440 Antisense
GACTTCCCGTAACACCAAGTACATC 575 1 456 Antisense
Sequence Source Affymetrix Proprietary Database