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[185472_at]

Description Y39B6B.FF /REP_DB=WormBase Gene ID /WP=CE21680 /TR=Q9NES8 /GB=CAB60937.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 62      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 157.8
(3)
P 		97.9
(-1)
A 		99.3
(-0.9)
P 		67.4
(-3)
A 		90
B 118.5
(3)
P 		56.5
(-1.3)
A 		83.6
(0.6)
P 		31.9
(-3)
A 		87
C 107.1
(1.5)
A 		100.7
(1)
P 		125.5
(3)
P 		52
(-3)
A 		74
avr 127.8
(3) 		85
(-0.3) 		102.8
(1.1) 		50.4
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 54.7
(-3)
A 		124.9
(3)
P 		76.6
(-1.1)
A 		80.7
(-0.8)
A 		55.6
(-2.9)
A 		84.3
(-0.5)
A 		70
B 101
(2.4)
A 		86.6
(1.2)
A 		108.3
(3)
P 		35.8
(-3)
A 		73
(0.1)
M 		50.4
(-1.8)
P 		73
C 142.6
(3)
P 		102.1
(-0.2)
P 		70.5
(-2.7)
A 		79.1
(-2.1)
A 		80.4
(-2)
P 		67.3
(-3)
A 		75
avr 99.4
(2.2) 		104.5
(3) 		85.1
(0) 		65.2
(-3) 		69.7
(-2.3) 		67.3
(-2.7) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 57.5
(3)
P 		21.2
(-1.6)
A 		26
(-1)
P 		9.9
(-3)
A 		48
B 37.8
(3)
P 		14
(-1.6)
A 		19.4
(-0.6)
P 		6.8
(-3)
A 		31
C 35.5
(1.6)
A 		29
(0.5)
P 		43.7
(3)
P 		8.8
(-3)
A 		35
avr 43.6
(3) 		21.4
(-0.8) 		29.7
(0.6) 		8.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 10.1
(-3)
A 		44.4
(3)
P 		16.7
(-1.8)
A 		20.5
(-1.2)
A 		16.8
(-1.8)
A 		20.5
(-1.2)
A 		34
B 35.2
(3)
A 		28.8
(1.5)
A 		26.3
(0.9)
P 		9.5
(-3)
A 		29.7
(1.7)
M 		18.8
(-0.8)
P 		26
C 52.9
(3)
P 		31.2
(-0.5)
P 		17.9
(-2.7)
A 		15.9
(-3)
A 		26
(-1.4)
P 		22.5
(-1.9)
A 		37
avr 32.7
(2.4) 		34.8
(3) 		20.3
(-1.5) 		15.3
(-3) 		24.2
(-0.3) 		20.6
(-1.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19424
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.FF NCBI
Target Description Y39B6B.FF /REP_DB=WormBase Gene ID /WP=CE21680 /TR=Q9NES8 /GB=CAB60937.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171607(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171607 NCBI Caenorhabditis elegans Y39B6A.2 (Y39B6A.2) mRNA, complete cds. 10/11 None
GENEFINDER00000030702 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19193128:19201496:1 11/11 None
Y39B6A.2 ENSEMBL cdna:known chromosome:CEL140:V:19193120:19201825:1 gene:Y39B6A.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19193127-19201496(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.2
Entrez Gene 180263 Entrez gene
SwissProt Q9NES8 EMBL-EBI
WormBase CE36619 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16787_G_AT serine/threonine protein phosphatase, putative at
ATGENOME1:16786_AT serine/threonine protein phosphatase, putative at
ATH1-121501:263990_AT serine/threonine protein phosphatase, putative at
CANINE:1584210_AT similar to Serine/threonine protein phosphatase 5 (PP5) (Protein phosphatase T) (PP-T) (PPT) cfa
CANINE_2:CFA.11830.1.A1_AT similar to Serine/threonine protein phosphatase 5 (PP5) (Protein phosphatase T) (PP-T) (PPT) cfa
CANINE_2:CFA.18441.1.S1_S_AT similar to Serine/threonine protein phosphatase 5 (PP5) (Protein phosphatase T) (PP-T) (PPT) cfa
CANINE_2:CFAAFFX.7401.1.S1_AT similar to Serine/threonine protein phosphatase 5 (PP5) (Protein phosphatase T) (PP-T) (PPT) cfa
DROSOPHILA_2:1624743_S_AT Protein phosphatase D3 dm
DROSGENOME1:151515_AT Protein phosphatase D3 dm
DROSGENOME1:142291_AT Protein phosphatase D3 dm
HG-U95AV2:392_G_AT protein phosphatase 5, catalytic subunit hs
HC-G110:392_G_AT protein phosphatase 5, catalytic subunit hs
HG-U133A_2:201979_S_AT protein phosphatase 5, catalytic subunit hs
HG-U133A:201979_S_AT protein phosphatase 5, catalytic subunit hs
HG-U133_PLUS_2:201979_S_AT protein phosphatase 5, catalytic subunit hs
HG-U95AV2:391_AT protein phosphatase 5, catalytic subunit hs
HC-G110:391_AT protein phosphatase 5, catalytic subunit hs
HU35KSUBC:RC_AA022512_S_AT protein phosphatase 5, catalytic subunit hs
HU35KSUBD:RC_T64887_F_AT protein phosphatase 5, catalytic subunit hs
HUGENEFL:X89416_AT protein phosphatase 5, catalytic subunit hs
U133_X3P:G5453957_3P_X_AT protein phosphatase 5, catalytic subunit hs
U133_X3P:G5453957_3P_AT protein phosphatase 5, catalytic subunit hs
U133_X3P:HS.75180.1.S1_3P_AT protein phosphatase 5, catalytic subunit hs
HG-U133A_2:215705_AT protein phosphatase 5, catalytic subunit hs
HG-FOCUS:215705_AT protein phosphatase 5, catalytic subunit hs
HG-U133_PLUS_2:215705_AT protein phosphatase 5, catalytic subunit hs
HG-U133A:215705_AT protein phosphatase 5, catalytic subunit hs
MU11KSUBA:AA209063_F_AT protein phosphatase 5, catalytic subunit mm
MU11KSUBA:AF018262_S_AT protein phosphatase 5, catalytic subunit mm
MU11KSUBB:MSA.24642.0_S_AT protein phosphatase 5, catalytic subunit mm
MU11KSUBB:MSA.22686.0_S_AT protein phosphatase 5, catalytic subunit mm
MG-U74AV2:97532_AT protein phosphatase 5, catalytic subunit mm
MOE430A:1424115_AT protein phosphatase 5, catalytic subunit mm
MOUSE430A_2:1424115_AT protein phosphatase 5, catalytic subunit mm
MOUSE430_2:1424115_AT protein phosphatase 5, catalytic subunit mm
MOE430A:1424116_X_AT protein phosphatase 5, catalytic subunit mm
MOUSE430A_2:1424116_X_AT protein phosphatase 5, catalytic subunit mm
MOUSE430_2:1424116_X_AT protein phosphatase 5, catalytic subunit mm
MOE430A:1451242_A_AT protein phosphatase 5, catalytic subunit mm
MOUSE430A_2:1451242_A_AT protein phosphatase 5, catalytic subunit mm
MOUSE430_2:1451242_A_AT protein phosphatase 5, catalytic subunit mm
MU19KSUBA:TC18671_S_AT Protein phosphatase 5, catalytic subunit, mRNA (cDNA clone MGC:5847 IMAGE:3590322) mm
RG-U34A:X77237_AT protein phosphatase 5, catalytic subunit rn
RAE230A:1398242_AT protein phosphatase 5, catalytic subunit rn
RAT230_2:1398242_AT protein phosphatase 5, catalytic subunit rn
RAE230B:1397023_AT Protein phosphatase 5, catalytic subunit rn
RAT230_2:1397023_AT Protein phosphatase 5, catalytic subunit rn
YEAST_2:1777639_AT Protein serine/threonine phosphatase with similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC51076 Hypothetical protein Y39B6A.2 [Caenorhabditis elegans] ref|NP_741697.2| Y39B6A.2 [Caenorhabditis elegans] 0.0
blast CAE73140 Hypothetical protein CBG20528 [Caenorhabditis briggsae] 0.0
blast XP_624242 PREDICTED: similar to CG8402-PA, isoform A [Apis mellifera] 1.0E-178
blast XP_624242 PREDICTED: similar to CG8402-PA, isoform A [Apis mellifera] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.9E-34
Pfam IPR001440 EMBL-EBI TPR repeat 2.9E-7
Pfam IPR001440 EMBL-EBI TPR repeat 8.8E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.5E-34
Sequence
Target Sequence 
>C. ELEGANS:185472_AT
tacggagacgttctgctggttaccattgtgccatttgattaatgagaagatttttgtgtg
ccatggtggattattcaaagaagacggtgtaacactggaagatattcgaaaaactgacag
aaatcgtcagccaccagatgagggtatcatgtgtgatctactttgggagaaaaattggaa
aaatctgaaaattttatatccagatggaaaaatcaataaaaattccaattgtcagccaaa
aacttgcaaaaatgcgtcagatcctcaaccaatcaacggccggagcccgtcaaaacgtgg
tgtcggctgtcaatttggaccagatgtgacgtcaaaatggtgtgaaacgaatggaattga
atatgtagtgagatcacatgaagtgaagccagaaggatatgaaatgcaccataatggaca
atgttttaccgttttctcggcaccaaattattgtgatcaaatgaataataagggagcttt
tatcacgattactggcgataatttgacgccccgattcacgccattcgacgcggttccaca
tccgaaattgcctccaatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGGAGACGTTCTGCTGGTTACCA 669 641 1002 Antisense
TCTGCTGGTTACCATTGTGCCATTT 56 609 1013 Antisense
GAAGATTTTTGTGTGCCATGGTGGA 51 339 1047 Antisense
GACAGAAATCGTCAGCCACCAGATG 704 367 1117 Antisense
AAAATGCGTCAGATCCTCAACCAAT 510 133 1250 Antisense
CGGAGCCCGTCAAAACGTGGTGTCG 304 241 1282 Antisense
GGTGTCGGCTGTCAATTTGGACCAG 660 499 1300 Antisense
TGGACAATGTTTTACCGTTTTCTCG 453 547 1416 Antisense
GGAGCTTTTATCACGATTACTGGCG 282 521 1474 Antisense
GGCGATAATTTGACGCCCCGATTCA 700 539 1495 Antisense
CACATCCGAAATTGCCTCCAATGGC 22 197 1538 Antisense
Sequence Source Affymetrix Proprietary Database