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[185471_at]

Description F20E11.10 /REP_DB=WormBase Gene ID /WP=CE18619 /TR=Q9XV78 /GB=CAB04147.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 25      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 3.1
(-3)
A 		33.2
(2.3)
A 		9.8
(-1.8)
A 		37.5
(3)
A 		34
B 0.5
(-3)
A 		2.7
(-2.5)
A 		28.6
(3)
A 		2.6
(-2.6)
A 		28
C 4
(-2.6)
A 		18.4
(1.1)
A 		2.3
(-3)
A 		26.1
(3)
A 		24
avr 2.5
(-3) 		18.1
(1.8) 		13.6
(0.4) 		22.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 40.9
(3)
P 		13.3
(-1.2)
A 		5.1
(-2.5)
A 		1.7
(-3)
A 		2.8
(-2.8)
A 		1.6
(-3)
A 		39
B 2.7
(-2.4)
A 		5.7
(-1.3)
A 		18.3
(3)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		3.5
(-2.1)
A 		17
C 25.7
(3)
M 		2.1
(-3)
A 		23.6
(2.5)
A 		3
(-2.8)
A 		3
(-2.8)
A 		9.6
(-1.1)
A 		24
avr 23.1
(3) 		7
(-1.6) 		15.7
(0.9) 		2
(-3) 		2.2
(-2.9) 		4.9
(-2.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-3)
A 		7.2
(3)
A 		2.6
(-1.5)
A 		5.5
(1.3)
A 		6
B 0.2
(-3)
A 		0.7
(-2.5)
A 		6.6
(3)
A 		0.6
(-2.6)
A 		6
C 1.3
(-2.3)
A 		5.3
(3)
A 		0.8
(-3)
A 		4.4
(1.8)
A 		5
avr 0.9
(-3) 		4.4
(3) 		3.3
(1.1) 		3.5
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.5
(3)
P 		4.7
(0.6)
A 		1.1
(-2.4)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		7
B 0.9
(-2.1)
A 		1.9
(-0.7)
A 		4.4
(3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		1.3
(-1.5)
A 		4
C 9.5
(3)
M 		0.7
(-2.9)
A 		6
(0.6)
A 		0.6
(-3)
A 		1
(-2.7)
A 		3.2
(-1.2)
A 		9
avr 6
(3) 		2.4
(-0.9) 		3.8
(0.6) 		0.4
(-3) 		0.7
(-2.7) 		1.6
(-1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13636
Sequence Type Exemplar sequence
Representative Public ID F20E11.10 NCBI
Target Description F20E11.10 /REP_DB=WormBase Gene ID /WP=CE18619 /TR=Q9XV78 /GB=CAB04147.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075016 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-203) (srh-203) mRNA, complete cds. 11/11 A 
F20E11.10 ENSEMBL cdna:known chromosome:CEL140:V:17457072:17458874:-1 gene:F20E11.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y68A4A.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17457071-17458874(-) 100.0 100.0
chrV:17189450-17191258(-) 93.41 93.41
Public Domain and Genome References
Gene Title
Gene Symbol srh-203
Ensembl F20E11.10
Entrez Gene 184738 Entrez gene
SwissProt Q9XV78 EMBL-EBI
WormBase CE18619 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04147 Hypothetical protein F20E11.10 [Caenorhabditis elegans] ref|NP_507417.1| Serpentine Receptor, class H family member (srh-203) [Caenorhabditis elegans] 0.0
blast T27299 hypothetical protein Y68A4A.1 - Caenorhabditis elegans 1.0E-161
blast AAB94165 Serpentine receptor, class h protein 204 [Caenorhabditis elegans] ref|NP_504171.1| Serpentine Receptor, class H family member (srh-204) [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507417.1 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
F20E11.10 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:185471_AT
gtttatgccatttcattattttatctacacatttatgttttctatcatcttttttctcgt
tcctgatcagaaatccgcattgcagcaggtgtttcagacttttccctgccttccccgtga
aatatacgaagctcccgtctatgtgatcgccgacgatgttacttttcccgtaatcgtcat
atttctaggcgtagtagctgtcactgtagaaatactattttatctcatgtacctcatctg
gaatagtatcaaacagctgaaggaaaataaaatgtcacagaagacatttcaacttcaaaa
gcaatttctattcgcgattattgtgcagagcagtgtccaaatgatatgtttcatcattcc
tcttctaactttttggtttgcgtttttggaaggctattataatcaaggattggtcaactt
tcaatttataattgcttcattacacgggatagtttcaacgttggcaatgctgttacttca
caagccttatcgagcagctgttgcgcgaattttctggagatcaatgaggctgcagccaca
gacgacacaaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTATGCCATTTCATTATTTTATC 519 449 435 Antisense
CTTTTTTCTCGTTCCTGATCAGAAA 357 223 483 Antisense
GTTCCTGATCAGAAATCCGCATTGC 498 441 493 Antisense
AAAAGCAATTTCTATTCGCGATTAT 127 133 731 Antisense
TATTCGCGATTATTGTGCAGAGCAG 234 663 743 Antisense
TGCAGAGCAGTGTCCAAATGATATG 540 577 758 Antisense
AAATGATATGTTTCATCATTCCTCT 29 121 773 Antisense
TCAAGGATTGGTCAACTTTCAATTT 195 603 837 Antisense
TTGCGCGAATTTTCTGGAGATCAAT 218 703 935 Antisense
GATCAATGAGGCTGCAGCCACAGAC 389 421 953 Antisense
TGCAGCCACAGACGACACAAATTTC 58 579 965 Antisense
Sequence Source Affymetrix Proprietary Database