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[185470_at]

Description T27C10.3 /REP_DB=WormBase Gene ID /WP=CE19605 /TR=Q9TZM2 /GB=AAC67411.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 79.9
(-3)
A 		96.2
(-1.4)
A 		101.9
(-0.9)
A 		142.9
(3)
P 		63
B 75.6
(-2.3)
A 		128.5
(3)
A 		68.6
(-3)
A 		128.3
(3)
A 		60
C 72.2
(-2.9)
A 		114.7
(-0.1)
A 		71.2
(-3)
A 		162.4
(3)
P 		91
avr 75.9
(-3) 		113.1
(0.3) 		80.6
(-2.6) 		144.5
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 61.1
(-2.9)
A 		52.7
(-3)
A 		111.9
(-2.1)
A 		177.6
(-1)
P 		353.8
(1.7)
P 		435.2
(3)
P 		383
B 81.7
(-3)
A 		95.6
(-2.8)
A 		136.1
(-2.2)
A 		165.7
(-1.8)
P 		390.5
(1.4)
P 		498.7
(3)
P 		417
C 25.6
(-3)
A 		126.7
(-1.8)
A 		93.4
(-2.2)
A 		208.3
(-0.7)
A 		208.9
(-0.7)
P 		512.6
(3)
P 		487
avr 56.1
(-3) 		91.7
(-2.5) 		113.8
(-2.2) 		183.9
(-1.2) 		317.7
(0.7) 		482.2
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 29.1
(3)
A 		20.9
(-3)
A 		26.6
(1.2)
A 		20.9
(-3)
P 		8
B 24.1
(0.1)
A 		31.7
(3)
A 		15.9
(-3)
A 		27.3
(1.3)
A 		16
C 23.9
(-3)
A 		33
(3)
A 		24.8
(-2.4)
A 		27.4
(-0.7)
P 		9
avr 25.7
(0.2) 		28.5
(3) 		22.4
(-3) 		25.2
(-0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 11.3
(-3)
A 		18.7
(-2.5)
A 		24.4
(-2.2)
A 		45
(-0.9)
P 		106.8
(3)
P 		106
(2.9)
P 		96
B 28.4
(-3)
A 		31.8
(-2.9)
A 		33
(-2.8)
A 		43.9
(-2.4)
P 		158.6
(2)
P 		186
(3)
P 		158
C 9.5
(-3)
A 		38.6
(-1.9)
A 		23.8
(-2.5)
A 		41.9
(-1.8)
A 		67.6
(-0.8)
P 		171.6
(3)
P 		162
avr 16.4
(-3) 		29.7
(-2.4) 		27.1
(-2.5) 		43.6
(-1.8) 		111
(1.1) 		154.5
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1447
Sequence Type Exemplar sequence
Representative Public ID T27C10.3 NCBI
Target Description T27C10.3 /REP_DB=WormBase Gene ID /WP=CE19605 /TR=Q9TZM2 /GB=AAC67411.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060439 NCBI Caenorhabditis elegans T27C10.3 (T27C10.3) mRNA, complete cds. 11/11 None
SNAP00000038112 ENSEMBL cdna:SNAP chromosome:CEL140:I:10887336:10900164:1 11/11 None
GENEFINDER00000038118 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10897099:10900164:1 11/11 None
T27C10.3 ENSEMBL cdna:known chromosome:CEL140:I:10898122:10900164:1 gene:T27C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10898052-10900095(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27C10.3
Entrez Gene 188992 Entrez gene
SwissProt Q9TZM2 EMBL-EBI
WormBase CE19605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_492840 T27C10.3 [Caenorhabditis elegans] sp|Q9TZM2|MO25L_CAEEL Hypothetical MO25-like protein T27C10.3 in chromosome I gb|AAC67411.1| Hypothetical protein T27C10.3 [Caenorhabditis elegans] 0.0
blast CAE63871 Hypothetical protein CBG08436 [Caenorhabditis briggsae] 4.0E-81
blast CAE63871 Hypothetical protein CBG08436 [Caenorhabditis briggsae] 7.0E-81
blast CAE63871 Hypothetical protein CBG08436 [Caenorhabditis briggsae] 4.0E-60
blast NP_492837 T27C10.4 [Caenorhabditis elegans] gb|AAC67412.1| Hypothetical protein T27C10.4 [Caenorhabditis elegans] 7.0E-41
blast XP_721041 hypothetical protein CaO19_8415 [Candida albicans SC5314] ref|XP_720920.1| hypothetical protein CaO19_796 [Candida albicans SC5314] gb|EAL02227.1| hypothetical protein CaO19.8415 [Candida albicans SC5314] gb|EAL02100.1| hypothetical protein CaO19.796 [Candida albicans SC5314] 6.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.3E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.2E-4
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185470_AT
ataaactcattgcttgctccaacttcttcattcaagcaaaatcattcaaattcttgaatg
agctcttcactgctcaaacaaactatgaaactcgttccctttggatggccgaacccgcat
tcatcaagctagtcgtcctggctatacagagcaataaacatgccgttcgatctcgagccg
tctcgattttggagatatttattagaaatccacgcaattcgccggaagttcacgagttca
ttggtagaaatcgaaatgttttgattgcattcttcttcaactcagccccaattcactact
atcagggaagtccaaatgaaaaagaagatgctcaatatgctcggatggcttataagttgc
tcaattgggatatgcagagaccattcacccaggaacaattacaagattttgaggagggat
ggacgcatcaaaagaaaatgcgagaagaacaactcgtccgaacttgcttccacgacaata
atccaagacttccgaaagtgaatcacgtctaccgtacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAACTCATTGCTTGCTCCAACTT 47 25 449 Antisense
ATGAAACTCGTTCCCTTTGGATGGC 317 45 533 Antisense
GAACCCGCATTCATCAAGCTAGTCG 258 347 559 Antisense
GCTAGTCGTCCTGGCTATACAGAGC 486 301 576 Antisense
GATCTCGAGCCGTCTCGATTTTGGA 579 417 617 Antisense
GAAATCCACGCAATTCGCCGGAAGT 480 361 653 Antisense
TGATTGCATTCTTCTTCAACTCAGC 103 565 710 Antisense
GATGCTCAATATGCTCGGATGGCTT 9 415 775 Antisense
AGAACAACTCGTCCGAACTTGCTTC 210 73 894 Antisense
GAACTTGCTTCCACGACAATAATCC 259 349 908 Antisense
GAAAGTGAATCACGTCTACCGTACC 31 361 942 Antisense
Sequence Source Affymetrix Proprietary Database