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[185466_at]

Description F59E12.1 /REP_DB=WormBase Gene ID /WP=CE25924 /TR=O01905 /GB=AAB54252.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 78      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 82      6grp_total > 68      4grp_total > 39      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 446.5
(3)
P 		293.5
(-3)
P 		327.6
(-1.7)
P 		338.8
(-1.2)
P 		153
B 443.9
(3)
P 		321.2
(-2.3)
P 		304.6
(-3)
P 		340
(-1.5)
P 		139
C 378.2
(2.9)
P 		349
(-0.8)
P 		331.6
(-3)
P 		379
(3)
P 		47
avr 422.9
(3) 		321.2
(-3) 		321.3
(-3) 		352.6
(-1.1) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 320.9
(-2.3)
P 		284.8
(-2.9)
P 		278.1
(-3)
P 		326.3
(-2.3)
P 		298.2
(-2.7)
P 		670.5
(3)
P 		392
B 357.2
(-0.5)
P 		278.1
(-2.2)
P 		241.3
(-3)
P 		249.2
(-2.8)
P 		328.4
(-1.1)
P 		521.2
(3)
P 		280
C 322.5
(-1.8)
P 		326.2
(-1.7)
P 		305.3
(-2.3)
P 		277.8
(-3)
P 		452.5
(1.6)
P 		504.8
(3)
P 		227
avr 333.5
(-1.8) 		296.4
(-2.6) 		274.9
(-3) 		284.4
(-2.8) 		359.7
(-1.2) 		565.5
(3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 162.6
(3)
P 		63.7
(-2.3)
P 		85.6
(-1.1)
P 		49.6
(-3)
P 		113
B 141.6
(3)
P 		79.3
(-2.3)
P 		70.6
(-3)
P 		72.5
(-2.8)
P 		71
C 125.2
(3)
P 		100.3
(0.6)
P 		115.6
(2.1)
P 		63.9
(-3)
P 		61
avr 143.1
(3) 		81.1
(-1.6) 		90.6
(-0.9) 		62
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 59.1
(-3)
P 		101.3
(-0.6)
P 		60.6
(-2.9)
P 		82.8
(-1.6)
P 		90
(-1.2)
P 		163.2
(3)
P 		104
B 124.3
(-0.1)
P 		92.6
(-1.5)
P 		58.6
(-3)
P 		66
(-2.7)
P 		133.4
(0.3)
P 		194.3
(3)
P 		136
C 119.5
(0.4)
P 		99.5
(-0.7)
P 		77.7
(-1.8)
P 		55.9
(-3)
P 		146.4
(1.8)
P 		169
(3)
P 		113
avr 101
(-1.1) 		97.8
(-1.2) 		65.6
(-3) 		68.2
(-2.9) 		123.3
(0.2) 		175.5
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4822
Sequence Type Exemplar sequence
Representative Public ID F59E12.1 NCBI
Target Description F59E12.1 /REP_DB=WormBase Gene ID /WP=CE25924 /TR=O01905 /GB=AAB54252.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062704 NCBI Caenorhabditis elegans F59E12.1 (F59E12.1) mRNA, complete cds. 11/11 None
SNAP00000018074 ENSEMBL cdna:SNAP chromosome:CEL140:II:5654484:5657181:1 11/11 None
GENEFINDER00000018077 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5654484:5657181:1 11/11 None
F59E12.1 ENSEMBL cdna:known chromosome:CEL140:II:5654484:5657340:1 gene:F59E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5654481-5657179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59E12.1
Entrez Gene 173957 Entrez gene
SwissProt O01905 EMBL-EBI
WormBase CE28569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK82896 Hypothetical protein F59E12.1 [Caenorhabditis elegans] ref|NP_495105.1| F59E12.1 [Caenorhabditis elegans] 0.0
blast T15269 hypothetical protein F59E12.1 - Caenorhabditis elegans 0.0
blast CAE59158 Hypothetical protein CBG02464 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001487 EMBL-EBI Bromodomain 2.4E-5
Sequence
Target Sequence 
>C. ELEGANS:185466_AT
gcaggagtacatgaatcaccagtcaaacgacatagaagagacgacaaggcgagagaggat
accacgaaggtttgtgattcagttggaagtattatgtatttattaaaaattgaattacag
ttgaaacttctcgcaatgtatcgttatcttcatgattgtgaatggtcagaagcattcaaa
aagccagtgccgttgggtgaagcaacatacgatcaaggagtcctcgaaagaattgatttg
agcctgataaagaaggaaattgataatggaacaatcaatagtgaatctggattccttctt
cgggcgtatcgaatgttgtcgaatgcaataatgtacaatggttatgatcatgatgttcat
cttcatgcaaaatatattatcgagcatgtgatgaacgatatacatactctgaatcttgat
gataaacgtggtgtagctaaacgtgcaatccaagttgaagaaattgccgacgcctctcgc
tcaacatccatggatccagacccgatgactccagctggaaatgttggaatgaagagaaca
gtgttccgtaaagatccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGAGTACATGAATCACCAGTCA 16 311 1882 Antisense
CTTCTCGCAATGTATCGTTATCTTC 328 221 2008 Antisense
AAAGCCAGTGCCGTTGGGTGAAGCA 219 125 2061 Antisense
AACATACGATCAAGGAGTCCTCGAA 374 137 2085 Antisense
AGTGAATCTGGATTCCTTCTTCGGG 88 61 2161 Antisense
ATTCCTTCTTCGGGCGTATCGAATG 3 9 2172 Antisense
GGTGTAGCTAAACGTGCAATCCAAG 348 499 2311 Antisense
AGTTGAAGAAATTGCCGACGCCTCT 642 63 2334 Antisense
TCTCGCTCAACATCCATGGATCCAG 615 609 2356 Antisense
TCCAGACCCGATGACTCCAGCTGGA 122 591 2376 Antisense
GAACAGTGTTCCGTAAAGATCCAAA 503 351 2417 Antisense
Sequence Source Affymetrix Proprietary Database