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[185465_at]

Description C14C11.4 /REP_DB=WormBase Gene ID /WP=CE27683 /TR=Q17976 /GB=AAA96104.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 54      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 272.2
(3)
P 		130.1
(-1.2)
A 		150.9
(-0.6)
A 		67.5
(-3)
A 		205
B 306.3
(3)
P 		131.5
(-0.8)
A 		150
(-0.4)
A 		26.8
(-3)
A 		280
C 283.6
(3)
P 		127.1
(-2.4)
A 		109.2
(-3)
A 		115.1
(-2.8)
A 		174
avr 287.4
(3) 		129.6
(-1.4) 		136.7
(-1.2) 		69.8
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 218.3
(3)
M 		182.8
(1.6)
P 		95.3
(-2)
P 		128.9
(-0.6)
A 		69.5
(-3)
A 		71.3
(-2.9)
A 		149
B 147.2
(1.8)
P 		170.4
(3)
P 		108.5
(-0.3)
A 		78.1
(-1.9)
A 		94.6
(-1)
A 		57.8
(-3)
A 		113
C 184.6
(3)
P 		136.8
(1)
A 		165.1
(2.2)
P 		39.4
(-3)
A 		97.8
(-0.6)
A 		66.7
(-1.9)
A 		145
avr 183.4
(3) 		163.3
(2) 		123
(-0.1) 		82.1
(-2.1) 		87.3
(-1.9) 		65.3
(-3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 99.1
(3)
P 		28.2
(-1.8)
A 		39.5
(-1)
A 		9.9
(-3)
A 		89
B 97.7
(3)
P 		32.5
(-1.3)
A 		34.8
(-1.1)
A 		5.7
(-3)
A 		92
C 93.9
(3)
P 		36.6
(-1.6)
A 		38.1
(-1.5)
A 		19.4
(-3)
A 		75
avr 96.9
(3) 		32.4
(-1.5) 		37.5
(-1.2) 		11.7
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 40.2
(-0.1)
M 		65
(3)
P 		20.8
(-2.6)
P 		32.7
(-1.1)
A 		21
(-2.5)
A 		17.3
(-3)
A 		48
B 51.2
(2.1)
P 		56.7
(3)
P 		26.4
(-2.1)
A 		20.7
(-3)
A 		38.5
(-0)
A 		21.6
(-2.9)
A 		36
C 68.4
(3)
P 		41.7
(0.4)
A 		42
(0.4)
P 		7.9
(-3)
A 		31.7
(-0.6)
A 		22.3
(-1.6)
A 		61
avr 53.3
(2.8) 		54.5
(3) 		29.7
(-1.4) 		20.4
(-3) 		30.4
(-1.2) 		20.4
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11545
Sequence Type Exemplar sequence
Representative Public ID C14C11.4 NCBI
Target Description C14C11.4 /REP_DB=WormBase Gene ID /WP=CE27683 /TR=Q17976 /GB=AAA96104.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072087 NCBI Caenorhabditis elegans C14C11.4 (C14C11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000024136 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5647082:5653470:1 11/11 None
C14C11.4 ENSEMBL cdna:known chromosome:CEL140:V:5650159:5653628:1 gene:C14C11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024120 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5650522-5653470(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C11.4
Entrez Gene 178950 Entrez gene
SwissProt Q17976 EMBL-EBI
WormBase CE27683 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96104 Hypothetical protein C14C11.4 [Caenorhabditis elegans] ref|NP_504488.1| C14C11.4 [Caenorhabditis elegans] 0.0
blast CAE64596 Hypothetical protein CBG09351 [Caenorhabditis briggsae] 0.0
blast CAE64596 Hypothetical protein CBG09351 [Caenorhabditis briggsae] 1.0E-178
blast AAA96103 Serpentine receptor, class x protein 117 [Caenorhabditis elegans] ref|NP_504487.1| Serpentine Receptor, class X family member (srx-117) [Caenorhabditis elegans] 1.0E-158
blast AAC68973 Hypothetical protein H20E11.1a [Caenorhabditis elegans] ref|NP_001023259.1| H20E11.1a [Caenorhabditis elegans] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.5E-7
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.0E-10
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.5E-7
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.0E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504488.1 1 468-490
C14C11.4 1 468-490
GENEFINDER00000024136 8 22-44,65-87,97-119,132-154,185-207,228-250,255-277,754-776
Sequence
Target Sequence 
>C. ELEGANS:185465_AT
gaattatcagtgggaccccatcgccggtttcaagacgacttctcacttacacgccgctgt
cccaattagatatcagttttccgcaacagctccccgcatcacaattcactgtagaactca
ctgattgctcagtttacatgattctttcaaaaaacatgccagcaaatttctacatggcaa
atgacgagcgcatcggctatgtgttcactccaagctttctagacgattttcagacgcctg
ttttgaattttacactgagtagcaatgagtctcggcatttctctacaactgtagagtcag
tgacagtttatcagaatcaacttttggcaattaacgtttacaactcaaagggatattccg
caatgagcaccataataaccggaaatcaaacaggtggctctgcggaaggaatcggaacat
cagtgaatatcgatttctccggatccgtgtcaaaaggccaagcaaaaatacggtatcata
tttcaaagatctcaggcccaatcactggctactccttcattattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTATCAGTGGGACCCCATCGCC 513 323 746 Antisense
ATCGCCGGTTTCAAGACGACTTCTC 519 37 765 Antisense
AGATATCAGTTTTCCGCAACAGCTC 168 67 813 Antisense
TCCCCGCATCACAATTCACTGTAGA 478 597 836 Antisense
GACGAGCGCATCGGCTATGTGTTCA 380 379 928 Antisense
TGTTCACTCCAAGCTTTCTAGACGA 140 561 947 Antisense
TCTCGGCATTTCTCTACAACTGTAG 408 611 1015 Antisense
AGGGATATTCCGCAATGAGCACCAT 362 57 1094 Antisense
TCGATTTCTCCGGATCCGTGTCAAA 454 603 1175 Antisense
AAGATCTCAGGCCCAATCACTGGCT 622 155 1231 Antisense
TCACTGGCTACTCCTTCATTATTTA 250 627 1247 Antisense
Sequence Source Affymetrix Proprietary Database