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[185464_at]

Description F08D12.7 /REP_DB=WormBase Gene ID /WP=CE27927 /TR=P91230 /GB=AAK68305.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 19      4grp_total > 17      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 10.4
(-3)
A 		126
(-0.3)
A 		73.5
(-1.5)
A 		266
(3)
P 		256
B 78.3
(-3)
A 		108
(-1.8)
A 		90.9
(-2.5)
A 		227.8
(3)
P 		150
C 78.2
(-2.4)
A 		56.1
(-3)
A 		104.4
(-1.8)
P 		296.7
(3)
P 		241
avr 55.6
(-3) 		96.7
(-1.8) 		89.6
(-2) 		263.5
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 151.5
(3)
P 		65.5
(-2.4)
A 		137
(2.1)
P 		55.8
(-3)
P 		80.3
(-1.5)
P 		87.3
(-1)
M 		96
B 81.9
(-1.2)
P 		77
(-1.8)
P 		84.2
(-1)
P 		117.9
(2.8)
P 		119.6
(3)
P 		66.2
(-3)
P 		53
C 95.3
(0.3)
P 		123.1
(2.6)
P 		92.3
(0)
P 		110.7
(1.6)
P 		127.4
(3)
P 		56.1
(-3)
A 		71
avr 109.6
(3) 		88.5
(-0.2) 		104.5
(2.2) 		94.8
(0.8) 		109.1
(2.9) 		69.9
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 3.8
(-3)
A 		27.4
(1)
A 		19.2
(-0.4)
A 		38.9
(3)
P 		35
B 25
(-2.1)
A 		26.7
(-1.8)
A 		21.1
(-3)
A 		48.5
(3)
P 		27
C 25.9
(-1.3)
A 		16.1
(-3)
A 		36.4
(0.6)
P 		50
(3)
P 		34
avr 18.2
(-3) 		23.4
(-1.9) 		25.6
(-1.4) 		45.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 27.9
(2.3)
P 		23.3
(0.5)
A 		29.8
(3)
P 		14.2
(-3)
P 		24.2
(0.8)
P 		21.2
(-0.3)
M 		16
B 28.5
(-1.3)
P 		25.6
(-1.9)
P 		20.5
(-3)
P 		31.2
(-0.7)
P 		48.6
(3)
P 		24.7
(-2.1)
P 		28
C 35.3
(1.4)
P 		37.6
(2)
P 		23.5
(-1.7)
P 		22.3
(-2.1)
P 		41.2
(3)
P 		18.8
(-3)
A 		22
avr 30.6
(0.3) 		28.8
(-0.4) 		24.6
(-1.9) 		22.6
(-2.6) 		38
(3) 		21.6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4298
Sequence Type Exemplar sequence
Representative Public ID F08D12.7 NCBI
Target Description F08D12.7 /REP_DB=WormBase Gene ID /WP=CE27927 /TR=P91230 /GB=AAK68305.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061955 NCBI Caenorhabditis elegans F08D12.7 (F08D12.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000023729 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2768296:2769117:-1 11/11 None
F08D12.7 ENSEMBL cdna:known chromosome:CEL140:II:2767270:2769117:-1 gene:F08D12.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023714 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2768294-2769116(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.7
Entrez Gene 173621 Entrez gene
SwissProt P91230 EMBL-EBI
WormBase CE27927 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68305 Hypothetical protein F08D12.7 [Caenorhabditis elegans] ref|NP_494356.1| F08D12.7 [Caenorhabditis elegans] 0.0
blast T25675 hypothetical protein F08D12.7 - Caenorhabditis elegans 1.0E-129
blast T25675 hypothetical protein F08D12.7 - Caenorhabditis elegans 1.0E-127
blast AAK68305 Hypothetical protein F08D12.7 [Caenorhabditis elegans] ref|NP_494356.1| F08D12.7 [Caenorhabditis elegans] 1.0E-127
blast CAE72417 Hypothetical protein CBG19579 [Caenorhabditis briggsae] 1.0E-115
blast CAE72417 Hypothetical protein CBG19579 [Caenorhabditis briggsae] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 3.3E-59
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 12.0
Sequence
Target Sequence 
>C. ELEGANS:185464_AT
ggacaagtgtctcctgatggtcgcagagcttgggccgattatcagcaagcatgagcacgt
gaagcccaaagccgagactctgaaaaagatgaatgatttgtgtacagatattaagacgtg
ttttaaagcagcgacgtgtaaaaaaggagcccatacctatgaaagtatgagggatgcctg
tgatgggctcgagttgatgaccggaaatgtgcagccttgcatgacaaagttctatttagc
agtgtataatgagaagtacaattgcacaggagaacgggattatttgactgacgacctccc
agctcgccgcgtatcctacacatcaggccggttctgcttcttccaggtcattggcaagga
atgctccgaggagactgtagccatcctgagctccaacttcaactatgacaacctgattaa
tgtgctcacaactgtgccgggaggctttcaggacaactgcaatagactgcaccatgcgtt
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAAGTGTCTCCTGATGGTCGCA 593 525 102 Antisense
GTCGCAGAGCTTGGGCCGATTATCA 36 475 121 Antisense
ATGAGCACGTGAAGCCCAAAGCCGA 131 45 152 Antisense
GAGGGATGCCTGTGATGGGCTCGAG 54 403 270 Antisense
GATGACCGGAAATGTGCAGCCTTGC 568 411 297 Antisense
GGATTATTTGACTGACGACCTCCCA 50 505 378 Antisense
TCTGCTTCTTCCAGGTCATTGGCAA 205 609 434 Antisense
GGAGACTGTAGCCATCCTGAGCTCC 519 519 471 Antisense
TAATGTGCTCACAACTGTGCCGGGA 386 637 519 Antisense
GCCGGGAGGCTTTCAGGACAACTGC 463 283 537 Antisense
GCAATAGACTGCACCATGCGTTCAA 57 323 560 Antisense
Sequence Source Affymetrix Proprietary Database