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[185463_at]

Description Y53C10A.1 /REP_DB=WormBase Gene ID /WP=CE22369 /TR=Q9XW56 /GB=CAA22135.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 27      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 54.4
(-1.7)
A 		39.8
(-3)
A 		106.9
(3)
A 		49.4
(-2.1)
A 		67
B 79.5
(2.3)
A 		87.1
(3)
A 		26.3
(-3)
A 		84.6
(2.8)
A 		61
C 40.4
(-2.9)
A 		99.8
(2.7)
A 		39.6
(-3)
A 		103
(3)
A 		63
avr 58.1
(-2.9) 		75.6
(2) 		57.6
(-3) 		79
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 20.3
(-3)
A 		83.6
(-0.1)
A 		34.4
(-2.4)
A 		57.2
(-1.3)
A 		152.2
(3)
A 		101.6
(0.7)
A 		132
B 66.3
(-1.4)
A 		90
(-0.6)
A 		28.1
(-2.7)
A 		19.1
(-3)
A 		194.6
(3)
A 		145.1
(1.3)
A 		176
C 15.3
(-3)
A 		100.1
(0.8)
A 		37.7
(-2)
A 		67.9
(-0.7)
A 		128.6
(2)
A 		150
(3)
A 		135
avr 34
(-3) 		91.2
(-0.2) 		33.4
(-3) 		48.1
(-2.3) 		158.5
(3) 		132.2
(1.7) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.8
(0.6)
A 		8.6
(-2.6)
A 		28
(3)
A 		7.2
(-3)
A 		21
B 25.4
(3)
A 		21.5
(1.8)
A 		6.1
(-3)
A 		18
(0.7)
A 		19
C 13.4
(-3)
A 		28.7
(3)
A 		13.8
(-2.8)
A 		17.4
(-1.4)
A 		15
avr 19.5
(2.9) 		19.6
(3) 		16
(-1) 		14.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 3.7
(-3)
A 		29.7
(0.7)
A 		7.5
(-2.5)
A 		14.5
(-1.5)
A 		45.9
(3)
A 		24.7
(-0)
A 		42
B 23.1
(-1.5)
A 		30
(-1)
A 		6.8
(-2.9)
A 		5.1
(-3)
A 		79.1
(3)
A 		54.1
(1)
A 		74
C 5.7
(-3)
A 		30.5
(0.3)
A 		9.6
(-2.5)
A 		13.6
(-1.9)
A 		41.6
(1.8)
A 		50.2
(3)
A 		45
avr 10.8
(-2.6) 		30.1
(-0.2) 		8
(-3) 		11.1
(-2.6) 		55.5
(3) 		43
(1.4) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1328
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.1 NCBI
Target Description Y53C10A.1 /REP_DB=WormBase Gene ID /WP=CE22369 /TR=Q9XW56 /GB=CAA22135.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000679 ENSEMBL cdna:SNAP chromosome:CEL140:I:11960842:11981542:1 10/11 None
GENEFINDER00000000707 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11974393:11975713:1 11/11 None
Y53C10A.1 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11974393:11975713:1 gene:Y53C10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11974323-11975644(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53C10A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27114 hypothetical protein Y53C10A.1 - Caenorhabditis elegans 1.0E-148
blast T27114 hypothetical protein Y53C10A.1 - Caenorhabditis elegans 1.0E-111
blast AAC16990 Hypothetical protein B0205.1 [Caenorhabditis elegans] ref|NP_492805.2| B0205.1 [Caenorhabditis elegans] 4.0E-26
blast CAB55013 Hypothetical protein Y57A10A.8 [Caenorhabditis elegans] ref|NP_496588.2| Y57A10A.8 [Caenorhabditis elegans] 5.0E-16
blast AAC16990 Hypothetical protein B0205.1 [Caenorhabditis elegans] ref|NP_492805.2| B0205.1 [Caenorhabditis elegans] 3.0E-15
blast CAB55013 Hypothetical protein Y57A10A.8 [Caenorhabditis elegans] ref|NP_496588.2| Y57A10A.8 [Caenorhabditis elegans] 7.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.7E-8
Sequence
Target Sequence 
>C. ELEGANS:185463_AT
gaatttgtcggattggttccctgcgtgccgaaacaggaacccgctgctcgaatcgatttc
gacgaatatttcaacagagacgtgtcgttcaatccggaaatgcagcaagttccaccagcg
atcgaccgcaattgtgagaatccaacatttgatgagacagacaccaagaacaatgtgcag
cttgtcggtgcaactcgtaatggatcaaactcggatggaatcagcttgcacatgctggtg
aaacgattgaaggaaatgctcatctaccttggaagcgattacactcacttaatgggcaaa
atttactacttgttggcgatcagagatgagaaactcaatgcagaagacgtgatcgcgttc
ctgaagacgttcctcatcatcaatactgcacgaaaattccgattgtcaaccgaatctatt
ggctacacgaaatcgtcgaaaaagcgtgccacggagttcttgtctattctcaaatttgtt
ttgctcaatttggagtctccacaaatgcaggaatttcaaaacgaaatcgaaaataaaatt
gagaatattggagccgttgagaaggttattctcgtcgtcgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTGTCGGATTGGTTCCCTGCG 468 325 226 Antisense
TGCGTGCCGAAACAGGAACCCGCTG 335 499 247 Antisense
ACCCGCTGCTCGAATCGATTTCGAC 415 89 264 Antisense
AAATGCAGCAAGTTCCACCAGCGAT 158 119 323 Antisense
CCACCAGCGATCGACCGCAATTGTG 535 273 337 Antisense
ATGTGCAGCTTGTCGGTGCAACTCG 592 49 398 Antisense
TACCTTGGAAGCGATTACACTCACT 50 649 490 Antisense
GTGATCGCGTTCCTGAAGACGTTCC 672 483 574 Antisense
GTCAACCGAATCTATTGGCTACACG 373 463 630 Antisense
AAAGCGTGCCACGGAGTTCTTGTCT 279 123 666 Antisense
AGAAGGTTATTCTCGTCGTCGATGC 422 73 785 Antisense
Sequence Source Affymetrix Proprietary Database