[Home] | [Total List]

[185462_at]

Description C16A11.5 /REP_DB=WormBase Gene ID /WP=CE19355 /TR=O76579 /GB=AAK31411.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 19.4
(1.9)
A 		3
(-3)
A 		12.7
(-0.1)
A 		22.9
(3)
A 		20
B 8.2
(-0.7)
A 		14
(1.3)
A 		1.7
(-3)
A 		18.7
(3)
A 		17
C 29.1
(-2.3)
A 		34.5
(-1.7)
A 		23.3
(-3)
A 		74.4
(3)
A 		51
avr 18.9
(-1.6) 		17.2
(-1.9) 		12.6
(-3) 		38.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 4.9
(-3)
A 		17.5
(-0.9)
A 		41
(3)
A 		14.9
(-1.3)
A 		10.5
(-2.1)
A 		20
(-0.5)
A 		36
B 9.8
(-3)
A 		27
(0.3)
A 		27.1
(0.3)
A 		12.5
(-2.5)
A 		39.3
(2.7)
A 		40.9
(3)
A 		31
C 6
(-2.7)
A 		10.2
(-2.2)
A 		6.1
(-2.7)
A 		4
(-3)
A 		45.6
(2.6)
A 		48.7
(3)
A 		45
avr 6.9
(-3) 		18.2
(-0.7) 		24.7
(0.6) 		10.5
(-2.3) 		31.8
(2) 		36.5
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7
(3)
A 		0.7
(-3)
A 		3.3
(-0.5)
A 		3.3
(-0.5)
A 		6
B 2.6
(0.7)
A 		3.4
(2)
A 		0.4
(-3)
A 		4
(3)
A 		4
C 9.6
(-1)
A 		9.9
(-0.5)
A 		8.1
(-3)
A 		12.5
(3)
A 		4
avr 6.4
(2.6) 		4.7
(-1.2) 		3.9
(-3) 		6.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-3)
A 		6.2
(1)
A 		8.9
(3)
A 		3.8
(-0.8)
A 		3.2
(-1.3)
A 		4.9
(0)
A 		8
B 3.4
(-3)
A 		9
(-0.3)
A 		6.6
(-1.4)
A 		3.3
(-3)
A 		16
(3)
A 		15.3
(2.7)
A 		13
C 2.2
(-2.5)
A 		3.1
(-2.1)
A 		1.5
(-2.7)
A 		0.8
(-3)
A 		14.8
(2.4)
A 		16.3
(3)
A 		16
avr 2.2
(-3) 		6.1
(-0.7) 		5.7
(-0.9) 		2.6
(-2.8) 		11.3
(2.5) 		12.2
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5902
Sequence Type Exemplar sequence
Representative Public ID C16A11.5 NCBI
Target Description C16A11.5 /REP_DB=WormBase Gene ID /WP=CE19355 /TR=O76579 /GB=AAK31411.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062342(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062342 NCBI Caenorhabditis elegans C16A11.5 (C16A11.5) mRNA, complete cds. 9/11 None
SNAP00000042937 ENSEMBL cdna:SNAP chromosome:CEL140:II:4224647:4226247:1 9/11 None
GENEFINDER00000042950 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4219373:4226247:1 9/11 None
C16A11.5 ENSEMBL cdna:known chromosome:CEL140:II:4223308:4226247:1 gene:C16A11.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4223306-4226246(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A11.5
Entrez Gene 182650 Entrez gene
SwissProt O76579 EMBL-EBI
WormBase CE34689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31411 Hypothetical protein C16A11.5 [Caenorhabditis elegans] ref|NP_494743.2| C16A11.5 [Caenorhabditis elegans] 0.0
blast AAC71106 Hypothetical protein F31D5.1 [Caenorhabditis elegans] ref|NP_494742.1| F31D5.1 [Caenorhabditis elegans] 0.0
blast AAK84613 Hypothetical protein Y52E8A.4 [Caenorhabditis elegans] ref|NP_494758.1| Y52E8A.4 [Caenorhabditis elegans] 1.0E-154
blast CAE60655 Hypothetical protein CBG04306 [Caenorhabditis briggsae] 6.0E-53
blast CAE60655 Hypothetical protein CBG04306 [Caenorhabditis briggsae] 3.0E-50
blast CAE74269 Hypothetical protein CBG21960 [Caenorhabditis briggsae] 8.0E-44
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.60000002384186
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.59999990463257
scop a.4.5.DNA-binding protein Mj223 All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; DNA-binding protein Mj223 9.0
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 1.1E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042950 11 9-31,51-73,80-97,102-121,141-163,178-196,227-249,264-286,298-317,332-354,374-396
Sequence
Target Sequence 
>C. ELEGANS:185462_AT
aatgctctcaaactctccaaacaattgaagacgtcaaaaaagagttaaaaactagtcaga
acaaggaaaacaagatgagaaagaaagtgtcagagctggagaagaagctggatgtcgaga
atgtgcagaatgagcaggaagtcaaagagatggaggatgatctgcgtggaaaacaggaag
aactgaacatattgagaaacgattccctcaaagtccatgatgttttgatggagattgccg
acttgaagcagaagcattcgaaattggagaaacacgtggagggactgaaagaagagaatt
tgaaacaagaaagaaactataatctcacacaatccaatctggaagctaacctgtcgagta
tgagagaaggtcttactatgtgcggtttctcaccccagtatactgaagagcttgagcagg
aacgtcagaagtatcaagaaatgctgacggcgagatccgaagaaacttcagttcaagctg
aaccagctggtggcgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTCTCAAACTCTCCAAACAAT 258 167 1328 Antisense
AGAAGCTGGATGTCGAGAATGTGCA 468 73 1430 Antisense
AGAAACGATTCCCTCAAAGTCCATG 167 69 1522 Antisense
GAGATTGCCGACTTGAAGCAGAAGC 213 397 1558 Antisense
TAATCTCACACAATCCAATCTGGAA 66 637 1647 Antisense
CAATCTGGAAGCTAACCTGTCGAGT 83 181 1662 Antisense
AAGGTCTTACTATGTGCGGTTTCTC 15 157 1694 Antisense
GTTTCTCACCCCAGTATACTGAAGA 129 449 1712 Antisense
GAGCTTGAGCAGGAACGTCAGAAGT 675 387 1735 Antisense
GAAATGCTGACGGCGAGATCCGAAG 382 361 1765 Antisense
AAGCTGAACCAGCTGGTGGCGAGGA 533 149 1802 Antisense
Sequence Source Affymetrix Proprietary Database