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[185461_at]

Description F52D2.10 /REP_DB=WormBase Gene ID /WP=CE23756 /TR=Q9TXM7 /GB=AAF02106.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 6
(-3)
A 		11.8
(-2.4)
A 		8.8
(-2.7)
A 		62.7
(3)
A 		57
B 28
(-0.4)
A 		56.3
(3)
A 		6
(-3)
A 		52
(2.5)
A 		50
C 6
(-3)
A 		38.3
(-0.9)
A 		10.7
(-2.7)
A 		98
(3)
M 		92
avr 13.3
(-2.5) 		35.5
(-0.4) 		8.5
(-3) 		70.9
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 19.2
(0.3)
A 		14.4
(-0.6)
A 		32.5
(3)
A 		2.5
(-3)
A 		10.9
(-1.3)
A 		5.5
(-2.4)
A 		30
B 22
(-1.1)
A 		44.5
(3)
A 		34.2
(1.1)
A 		12.8
(-2.7)
A 		21.8
(-1.1)
A 		11.4
(-3)
A 		33
C 3.4
(-3)
A 		32.7
(3)
A 		11.3
(-1.4)
A 		29.7
(2.4)
A 		4.6
(-2.7)
A 		3.2
(-3)
A 		30
avr 14.9
(-0.9) 		30.5
(3) 		26
(1.9) 		15
(-0.9) 		12.4
(-1.6) 		6.7
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.2
(-3)
A 		2.6
(-2.7)
A 		2.3
(-2.9)
A 		9.2
(3)
A 		7
B 8.9
(0.6)
A 		13.9
(3)
A 		1.4
(-3)
A 		11.1
(1.7)
A 		13
C 2
(-3)
A 		11
(0.7)
A 		3.7
(-2.3)
A 		16.5
(3)
M 		15
avr 4.4
(-1.8) 		9.2
(1.1) 		2.5
(-3) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.5
(-0.3)
A 		5.1
(1.2)
A 		7.1
(3)
A 		0.6
(-3)
A 		3.3
(-0.5)
A 		1.3
(-2.4)
A 		7
B 7.7
(-0.7)
A 		14.8
(3)
A 		8.3
(-0.4)
A 		3.4
(-3)
A 		8.8
(-0.2)
A 		4.2
(-2.6)
A 		11
C 1.2
(-2.9)
A 		10
(3)
A 		2.9
(-1.8)
A 		6
(0.3)
A 		1.5
(-2.7)
A 		1.1
(-3)
A 		9
avr 4.1
(-1.5) 		10
(3) 		6.1
(-0) 		3.3
(-2.2) 		4.5
(-1.2) 		2.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18310
Sequence Type Exemplar sequence
Representative Public ID F52D2.10 NCBI
Target Description F52D2.10 /REP_DB=WormBase Gene ID /WP=CE23756 /TR=Q9TXM7 /GB=AAF02106.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075960 NCBI Caenorhabditis elegans F52D2.10 (F52D2.10) mRNA, complete cds. 11/11 None
F52D2.10 ENSEMBL cdna:known chromosome:CEL140:X:1955544:1956818:1 gene:F52D2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1955543-1956818(+) 100.0 100.0
chrX:1947392-1948667(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D2.10
Entrez Gene 186107 Entrez gene
SwissProt Q9TXM7 EMBL-EBI
WormBase CE23756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF02106 Hypothetical protein F52D2.10 [Caenorhabditis elegans] ref|NP_508361.1| F52D2.10 [Caenorhabditis elegans] 1.0E-101
blast AAK29865 Hypothetical protein Y22D7AR.11 [Caenorhabditis elegans] ref|NP_497448.1| Y22D7AR.11 [Caenorhabditis elegans] 6.0E-10
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 5.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.1E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.1E-12
Sequence
Target Sequence 
>C. ELEGANS:185461_AT
ttcaagtttcttccaaatttctcaatatgcctctcaccatatctaatcagattttgaaaa
agcttgggttcctggaacgattgacttgccgtaaagtgtgtcgaggtttgagaaccgccg
ttaataaatttgaatttaatgttggcaaaatcacgtttaacttatttctagacaaggttt
ctatggagttggaggaaaccgatttggagatgctattgaacaccgattcaaaagtagtgt
ttaacaatcattcacgactagataatattgaatattttatcgattatttgaaaagatcaa
aattttcaagcgtgaaaggaatttcccttcgaatgtttacattcaaggacagttgttcga
ttctctctaattttgatgcccacaatcttttaagaaaaagtaccttccggaagtgtgtaa
tacattgcaaagggtataaccagaaggaaatagcgaaagtattcaaaccggaatatgatg
gtggtaatgagtatgcatttgagtattcggacaataacaatttatttgaaatcaaatgta
tgagtcggcagcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAGTTTCTTCCAAATTTCTCAA 572 683 23 Antisense
CCAAATTTCTCAATATGCCTCTCAC 681 275 35 Antisense
TGCCTCTCACCATATCTAATCAGAT 5 587 50 Antisense
GGTTCCTGGAACGATTGACTTGCCG 275 507 89 Antisense
CTTGCCGTAAAGTGTGTCGAGGTTT 61 3 107 Antisense
TGGAGATGCTATTGAACACCGATTC 690 547 227 Antisense
GGAATTTCCCTTCGAATGTTTACAT 348 531 340 Antisense
AAGGACAGTTGTTCGATTCTCTCTA 378 161 367 Antisense
GATTCTCTCTAATTTTGATGCCCAC 76 433 381 Antisense
TTTGATGCCCACAATCTTTTAAGAA 13 667 394 Antisense
CAAATGTATGAGTCGGCAGCACTTT 285 193 555 Antisense
Sequence Source Affymetrix Proprietary Database