[Home] | [Total List]

[185460_s_at]

Description C27A12.7 /REP_DB=WormBase Gene ID /WP=CE08416 /TR=O01964 /GB=AAB93644.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 53      4grp_high_8_8 > 18      6grp_highest_nonorm > 85      6grp_total > 68      4grp_total > 30      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 838.5
(3)
P 		504.4
(-1.5)
P 		392.9
(-3)
P 		687
(1)
P 		446
B 677.5
(3)
P 		462.6
(-0.6)
P 		321
(-3)
P 		647.3
(2.5)
P 		357
C 766.1
(3)
P 		454
(-3)
P 		468.4
(-2.7)
P 		633
(0.4)
P 		312
avr 760.7
(3) 		473.7
(-1.7) 		394.1
(-3) 		655.8
(1.3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 695
(-1.2)
P 		673.9
(-1.5)
P 		555.6
(-3)
P 		684.1
(-1.3)
P 		633
(-2)
P 		1019
(3)
P 		463
B 695
(-1.5)
P 		656.7
(-2)
P 		581.9
(-2.9)
P 		574.1
(-3)
P 		712.8
(-1.3)
P 		1072.9
(3)
P 		499
C 677.7
(-1.5)
P 		746.2
(-0.6)
P 		658.8
(-1.8)
P 		714.7
(-1)
P 		575.2
(-3)
P 		995.5
(3)
P 		420
avr 689.2
(-1.7) 		692.3
(-1.7) 		598.8
(-3) 		657.6
(-2.2) 		640.3
(-2.4) 		1029.1
(3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 305.3
(3)
P 		109.5
(-2.7)
P 		102.7
(-2.9)
P 		100.6
(-3)
P 		205
B 216
(3)
P 		114.2
(-1.3)
P 		74.4
(-3)
P 		137.9
(-0.3)
P 		142
C 253.6
(3)
P 		130.5
(-2)
P 		163.2
(-0.7)
P 		106.7
(-3)
P 		147
avr 258.3
(3) 		118.1
(-2.8) 		113.4
(-3) 		115.1
(-2.9) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 128.1
(-2.7)
P 		239.7
(2.6)
P 		121
(-3)
P 		173.5
(-0.5)
P 		191
(0.3)
P 		248.1
(3)
P 		127
B 241.8
(-0.7)
P 		218.6
(-1.2)
P 		141.3
(-3)
P 		152.1
(-2.7)
P 		289.6
(0.4)
P 		400.1
(3)
P 		259
C 251.2
(0.4)
P 		227.7
(-0.3)
P 		167.7
(-2.2)
P 		143.7
(-3)
P 		186.1
(-1.7)
P 		333.2
(3)
P 		190
avr 207
(-0.9) 		228.7
(-0.2) 		143.3
(-3) 		156.4
(-2.6) 		222.2
(-0.4) 		327.1
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185460_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2392
Sequence Type Exemplar sequence
Representative Public ID C27A12.7 NCBI
Target Description C27A12.7 /REP_DB=WormBase Gene ID /WP=CE08416 /TR=O01964 /GB=AAB93644.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182053(11), NM_059347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182053 NCBI Caenorhabditis elegans C27A12.7b (C27A12.7) mRNA, complete cds. 11/11 None
NM_059347 NCBI Caenorhabditis elegans C27A12.7a (C27A12.7) mRNA, complete cds. 11/11 None
SNAP00000016772 ENSEMBL cdna:SNAP chromosome:CEL140:I:6064539:6066364:-1 11/11 None
GENEFINDER00000016781 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6064539:6066364:-1 11/11 None
C27A12.7b.1 ENSEMBL cdna:known chromosome:CEL140:I:6064082:6066365:-1 gene:C27A12.7 11/11 None
C27A12.7b.2 ENSEMBL cdna:known chromosome:CEL140:I:6064082:6066365:-1 gene:C27A12.7 11/11 None
C27A12.7b.3 ENSEMBL cdna:known chromosome:CEL140:I:6064082:6066445:-1 gene:C27A12.7 11/11 None
C27A12.7b.4 ENSEMBL cdna:known chromosome:CEL140:I:6064082:6066559:-1 gene:C27A12.7 11/11 None
C27A12.7b.5 ENSEMBL cdna:known chromosome:CEL140:I:6064354:6066365:-1 gene:C27A12.7 11/11 None
C27A12.7b.6 ENSEMBL cdna:known chromosome:CEL140:I:6064367:6066365:-1 gene:C27A12.7 11/11 None
C27A12.7a ENSEMBL cdna:known chromosome:CEL140:I:6064539:6066364:-1 gene:C27A12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6064538-6066364(-) 100.0 100.0
Public Domain and Genome References
Ensembl C27A12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93644 Hypothetical protein C27A12.7a [Caenorhabditis elegans] ref|NP_491748.1| C27A12.7a [Caenorhabditis elegans] 0.0
blast AAN84856 Hypothetical protein C27A12.7b [Caenorhabditis elegans] ref|NP_871853.1| C27A12.7b [Caenorhabditis elegans] 0.0
blast AAB93645 Hypothetical protein C27A12.8 [Caenorhabditis elegans] ref|NP_491749.2| ARI (ubiquitin ligase Ariadne) homolog family member (ari-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 8.3E-32
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 8.0E-4
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 8.3E-32
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 8.0E-4
Sequence
Target Sequence 
>C. ELEGANS:185460_S_AT
ggccgtggactgttcatgcaaacgcatggtataaatgcaacaaatttgacgacgaagcat
ctcaaacggccagaactgcacaagaattgtaccgtgcaaatttgacacgttatctttttt
actacaatcgctacatgggacatttacaaagtttgcggttggagggaaagttgaacaaga
cagttaaagcgaagatggatcaaatgcagaatctctcaatgtcttggattgatgttcaat
ttctacgaaaagcggtggacgtgctgtcggaatgccgtaacacgttgatgttcacataca
tattcgcgttttatttgaagcgagacaacaattcaatgatcttcgagtcaaatcagaagg
atcttgaaatggagaccgagcaactgtccggattgttggaacgagatcttgaaaatgagg
acttgttgactctcaagcagaaggtccaagacacattccgctacgtggaacaccgtcgca
aagtactccttgaccattgcgccgaaggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCGTGGACTGTTCATGCAAACGC 625 541 965 Antisense
GACGACGAAGCATCTCAAACGGCCA 528 377 1012 Antisense
GACACGTTATCTTTTTTACTACAAT 537 365 1068 Antisense
ATGCAGAATCTCTCAATGTCTTGGA 684 43 1168 Antisense
GGACGTGCTGTCGGAATGCCGTAAC 16 523 1221 Antisense
GGAGACCGAGCAACTGTCCGGATTG 449 519 1335 Antisense
GAGGACTTGTTGACTCTCAAGCAGA 215 405 1381 Antisense
GCAGAAGGTCCAAGACACATTCCGC 166 313 1401 Antisense
CACATTCCGCTACGTGGAACACCGT 303 195 1416 Antisense
TGGAACACCGTCGCAAAGTACTCCT 614 545 1430 Antisense
TCCTTGACCATTGCGCCGAAGGCAC 384 589 1451 Antisense
Sequence Source Affymetrix Proprietary Database