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[185458_s_at]

Description F19B10.2 /REP_DB=WormBase Gene ID /WP=CE27980 /TR=O02074 /GB=AAB52923.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.7
(-3)
A 		10.4
(3)
A 		6.4
(-0.1)
A 		3.5
(-2.4)
A 		8
B 2.3
(-2)
A 		4.4
(3)
A 		2.2
(-2.3)
A 		1.9
(-3)
A 		3
C 3
(-0)
A 		1.8
(-3)
A 		4.2
(3)
A 		2.7
(-0.8)
A 		2
avr 2.7
(-3) 		5.5
(3) 		4.3
(0.4) 		2.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		4.1
(-2.7)
A 		3.8
(-2.7)
A 		2.4
(-3)
A 		2.5
(-3)
A 		34.1
(3)
A 		32
B 0.8
(-3)
A 		2.4
(-2.9)
A 		3.5
(-2.7)
A 		2.7
(-2.8)
A 		1.5
(-2.9)
A 		65
(3)
P 		64
C 1.4
(-3)
A 		4.1
(-2.5)
A 		5.6
(-2.2)
A 		2.6
(-2.8)
A 		15.1
(-0.2)
A 		31.1
(3)
A 		30
avr 1.8
(-3) 		3.5
(-2.8) 		4.3
(-2.6) 		2.6
(-2.9) 		6.4
(-2.3) 		43.4
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-1.3)
A 		2.3
(3)
A 		1.7
(1)
A 		0.5
(-3)
A 		2
B 0.7
(-0.4)
A 		1.1
(3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		1
C 1
(0)
A 		0.5
(-3)
A 		1.5
(3)
A 		0.5
(-3)
A 		1
avr 0.9
(0) 		1.3
(3) 		1.2
(2.3) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.4
(-2.4)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		8.3
(3)
A 		8
B 0.3
(-3)
A 		0.8
(-2.9)
A 		0.9
(-2.8)
A 		0.7
(-2.9)
A 		0.6
(-2.9)
A 		24.2
(3)
P 		24
C 0.5
(-3)
A 		1.2
(-2.6)
A 		1.4
(-2.5)
A 		0.5
(-3)
A 		4.9
(-0.3)
A 		10.4
(3)
A 		10
avr 0.5
(-3) 		1.1
(-2.7) 		1
(-2.8) 		0.6
(-3) 		2.1
(-2.3) 		14.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185458_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5008
Sequence Type Exemplar sequence
Representative Public ID F19B10.2 NCBI
Target Description F19B10.2 /REP_DB=WormBase Gene ID /WP=CE27980 /TR=O02074 /GB=AAB52923.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062211 NCBI Caenorhabditis elegans F19B10.2 (F19B10.2) mRNA, complete cds. 11/11 None
SNAP00000017121 ENSEMBL cdna:SNAP chromosome:CEL140:II:3675705:3676582:1 11/11 None
GENEFINDER00000017133 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3675705:3677426:1 11/11 None
F19B10.2 ENSEMBL cdna:known chromosome:CEL140:II:3675667:3676672:1 gene:F19B10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3675703-3677425(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.2
Entrez Gene 173711 Entrez gene
SwissProt O02074 EMBL-EBI
WormBase CE32630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52923 Hypothetical protein F19B10.2 [Caenorhabditis elegans] ref|NP_494612.2| F19B10.2 [Caenorhabditis elegans] 3.0E-90
blast AAB52923 Hypothetical protein F19B10.2 [Caenorhabditis elegans] ref|NP_494612.2| F19B10.2 [Caenorhabditis elegans] 2.0E-88
blast AAB52923 Hypothetical protein F19B10.2 [Caenorhabditis elegans] ref|NP_494612.2| F19B10.2 [Caenorhabditis elegans] 5.0E-87
blast AAB65921 Hypothetical protein K12B6.8 [Caenorhabditis elegans] ref|NP_504611.1| K12B6.8 [Caenorhabditis elegans] 7.0E-10
blast CAE56494 Hypothetical protein CBG24211 [Caenorhabditis briggsae] 8.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185458_S_AT
gtccactctagtccagaagctgatgtccgaagcatgccaacgcgagacgaagatgctgga
agcgaatgagaagttgaaggcagagttggcggagctgcggaatcagatgttcgagctgga
ggccaactcggagaacctgaagagaccggcgctgagcgatggctatctggctaaaaagtc
ggcgaggctctacttgagcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCACTCTAGTCCAGAAGCTGATG 363 477 453 Antisense
AAGCTGATGTCCGAAGCATGCCAAC 197 149 469 Antisense
GAAGCATGCCAACGCGAGACGAAGA 195 341 481 Antisense
AGAGTTGGCGGAGCTGCGGAATCAG 639 67 534 Antisense
GGAGCTGCGGAATCAGATGTTCGAG 413 521 543 Antisense
AGATGTTCGAGCTGGAGGCCAACTC 455 67 557 Antisense
GGAGGCCAACTCGGAGAACCTGAAG 335 515 570 Antisense
GAAGAGACCGGCGCTGAGCGATGGC 635 337 591 Antisense
CGCTGAGCGATGGCTATCTGGCTAA 20 255 602 Antisense
ATCTGGCTAAAAAGTCGGCGAGGCT 642 33 617 Antisense
GTCGGCGAGGCTCTACTTGAGCAGT 135 473 630 Antisense
Sequence Source Affymetrix Proprietary Database