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[185457_at]

Description F19B10.2 /REP_DB=WormBase Gene ID /WP=CE27980 /TR=O02074 /GB=AAB52923.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 8.1
(-3)
A 		43.7
(3)
A 		8.6
(-2.9)
A 		12.9
(-2.2)
A 		36
B 40.2
(3)
A 		7.7
(-3)
A 		9.7
(-2.6)
A 		20.5
(-0.6)
A 		33
C 33.9
(3)
A 		11.4
(-2.3)
A 		8.5
(-3)
A 		29.8
(2)
A 		25
avr 27.4
(3) 		20.9
(0.9) 		8.9
(-3) 		21.1
(1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 5.7
(-2.1)
A 		3.9
(-2.9)
A 		5.6
(-2.1)
A 		3.7
(-3)
A 		16.6
(3)
A 		4.3
(-2.7)
A 		13
B 21
(-0.4)
A 		22.7
(-0)
A 		8.6
(-2.9)
A 		37.7
(3)
A 		29.2
(1.3)
A 		7.9
(-3)
A 		30
C 3.9
(-3)
A 		60.3
(3)
A 		8.1
(-2.6)
A 		14.4
(-1.9)
A 		37.7
(0.6)
A 		15.5
(-1.8)
A 		56
avr 10.2
(-2.2) 		29
(3) 		7.4
(-3) 		18.6
(0.1) 		27.8
(2.7) 		9.2
(-2.5) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.9
(-2.2)
A 		9.5
(3)
A 		2.2
(-2.8)
A 		1.9
(-3)
A 		8
B 12.8
(3)
A 		1.9
(-3)
A 		2.2
(-2.8)
A 		4.4
(-1.6)
A 		11
C 11.2
(3)
A 		3.3
(-2.8)
A 		3
(-3)
A 		5
(-1.5)
A 		8
avr 9
(3) 		4.9
(-0.8) 		2.5
(-3) 		3.8
(-1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		1.4
(-2.3)
A 		1.2
(-2.6)
A 		0.9
(-3)
A 		5
(3)
A 		1
(-2.9)
A 		4
B 7.3
(0.2)
A 		7.6
(0.4)
A 		2.1
(-3)
A 		10
(1.8)
A 		11.9
(3)
A 		2.9
(-2.5)
A 		10
C 1.4
(-3)
A 		18.4
(3)
A 		2
(-2.8)
A 		2.9
(-2.5)
A 		12.2
(0.8)
A 		5.2
(-1.7)
A 		17
avr 3.3
(-1.9) 		9.1
(2.5) 		1.8
(-3) 		4.6
(-0.9) 		9.7
(3) 		3
(-2.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5008
Sequence Type Exemplar sequence
Representative Public ID F19B10.2 NCBI
Target Description F19B10.2 /REP_DB=WormBase Gene ID /WP=CE27980 /TR=O02074 /GB=AAB52923.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062211
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017133 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3675705:3677426:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062211 1/11 Cross Hyb Matching Probes A 
SNAP00000017121 3/11 Cross Hyb Matching Probes None
SNAP00000017122 5/11 Cross Hyb Matching Probes None
F19B10.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3675703-3677425(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52923 Hypothetical protein F19B10.2 [Caenorhabditis elegans] ref|NP_494612.2| F19B10.2 [Caenorhabditis elegans] 2.0E-88
blast AAB65921 Hypothetical protein K12B6.8 [Caenorhabditis elegans] ref|NP_504611.1| K12B6.8 [Caenorhabditis elegans] 7.0E-10
blast CAE56494 Hypothetical protein CBG24211 [Caenorhabditis briggsae] 8.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185457_AT
aggatcacttgaacgaggcgaatcggaaatatttggatgaaaggaagaagggaggtttaa
gcttaacttttccataccatcaaaccgaacttccaaatgttccagaagctgcccgtgtca
cgtggtccactctagtccagaagctgatgtccgaagcatgccaacgcgagacgaagatgc
tggaagcgaatgagaagttgaaggcagagttggcggagctgcggaatcagatgttcgagc
tggaggccaactcggagaacctgaagagaccggcgctgagcgatggctatctggctaaaa
agtcggcgaggctctacttgagcagtgaaaatccaagtactcttccaaatgagctcgaaa
aaatgccggagtatccatggttctccgaaaaaatcctggaggagtacgaaaagatttcca
aattctacaaactccccactcaaagctctgccaaagattgtgccatctgcatcaacggca
tcgaacctttggaatttttggattcgacgctgaagtgccaaaattgcacacaaatgctca
acgtggattgtgccaaactttggctccccaagcaaagtatttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATCACTTGAACGAGGCGAATCG 101 57 329 Antisense
TAAGCTTAACTTTTCCATACCATCA 432 637 386 Antisense
CCATACCATCAAACCGAACTTCCAA 207 269 400 Antisense
CAAGTACTCTTCCAAATGAGCTCGA 576 183 662 Antisense
AAATGCCGGAGTATCCATGGTTCTC 696 117 689 Antisense
CCCACTCAAAGCTCTGCCAAAGATT 117 259 763 Antisense
AAGATTGTGCCATCTGCATCAACGG 221 155 782 Antisense
TGCATCAACGGCATCGAACCTTTGG 589 577 796 Antisense
GGATTCGACGCTGAAGTGCCAAAAT 633 507 828 Antisense
GGATTGTGCCAAACTTTGGCTCCCC 43 509 873 Antisense
TTGGCTCCCCAAGCAAAGTATTTGC 666 625 888 Antisense
Sequence Source Affymetrix Proprietary Database