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[185455_at]

Description Y59A8B.24 /REP_DB=WormBase Gene ID /WP=CE24491 /TR=Q9NES3 /GB=CAB60942.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 8.6
(-3)
A 		40.5
(1.2)
A 		54.4
(3)
A 		9.7
(-2.9)
A 		46
B 20.3
(-2.1)
A 		54.3
(3)
A 		14.1
(-3)
A 		25.4
(-1.3)
A 		40
C 45.5
(-0.9)
A 		106.3
(3)
A 		37.1
(-1.5)
A 		13.5
(-3)
A 		93
avr 24.8
(-2) 		67
(3) 		35.2
(-0.8) 		16.2
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 52.2
(3)
A 		38.2
(1.2)
A 		15.6
(-1.8)
A 		6.1
(-3)
A 		32.3
(0.4)
A 		13.7
(-2)
A 		46
B 24.8
(3)
A 		5.3
(-3)
A 		22
(2.1)
A 		21
(1.8)
A 		8.9
(-1.9)
A 		14.9
(-0)
A 		20
C 9.8
(-1.2)
A 		17.2
(1.1)
A 		23.2
(3)
A 		4.2
(-3)
A 		7.1
(-2.1)
A 		17.5
(1.2)
A 		19
avr 28.9
(3) 		20.2
(0.2) 		20.3
(0.2) 		10.4
(-3) 		16.1
(-1.2) 		15.4
(-1.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3.1
(-2.2)
A 		8.8
(0.5)
A 		14.2
(3)
A 		1.4
(-3)
A 		13
B 6.5
(-1.1)
A 		13.4
(3)
A 		3.3
(-3)
A 		5.4
(-1.8)
A 		10
C 15.1
(-0.3)
A 		30.6
(3)
A 		12.9
(-0.8)
A 		2.3
(-3)
A 		28
avr 8.2
(-0.9) 		17.6
(3) 		10.1
(-0.1) 		3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.6
(1)
A 		13.6
(3)
A 		3.4
(-2.1)
A 		1.5
(-3)
A 		9.7
(1.1)
A 		3.3
(-2.1)
A 		12
B 8.6
(3)
A 		1.7
(-3)
A 		5.3
(0.1)
A 		5.6
(0.4)
A 		3.6
(-1.3)
A 		5.5
(0.3)
A 		7
C 3.6
(0.3)
A 		5.2
(2.2)
A 		5.9
(3)
A 		0.8
(-3)
A 		2.3
(-1.2)
A 		5.9
(3)
A 		5
avr 7.3
(3) 		6.8
(2.4) 		4.9
(-0.1) 		2.6
(-3) 		5.2
(0.3) 		4.9
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13794
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.24 NCBI
Target Description Y59A8B.24 /REP_DB=WormBase Gene ID /WP=CE24491 /TR=Q9NES3 /GB=CAB60942.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075115 NCBI Caenorhabditis elegans Y59A8B.24 (Y59A8B.24) mRNA, complete cds. 11/11 None
GENEFINDER00000028720 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17952827:17955396:1 11/11 None
Y59A8B.24 ENSEMBL cdna:known chromosome:CEL140:V:17953924:17955396:1 gene:Y59A8B.24 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17953923-17955396(+) 98.66 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.24
Entrez Gene 190401 Entrez gene
SwissProt Q9NES3 EMBL-EBI
WormBase CE24491 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60942 Hypothetical protein Y59A8B.24 [Caenorhabditis elegans] ref|NP_507516.1| Y59A8B.24 [Caenorhabditis elegans] 4.0E-89
blast CAB60942 Hypothetical protein Y59A8B.24 [Caenorhabditis elegans] ref|NP_507516.1| Y59A8B.24 [Caenorhabditis elegans] 3.0E-87
Sequence
Target Sequence 
>C. ELEGANS:185455_AT
gacacgcgacgcgaccgcgtcgctccggctggctggccgggagagaggacgagagggtcg
aggcgaaaggggaaagcgcacttgcaccaaacatcacgggccgtgaggcggcggcgggga
gagatagagaaggaaaagaagcagagagaacagaggagatggaagaactttcgcgaaggg
cttcagctcttccacgggtaatgtcagcttgtcccattgacctctggaaagtagatcgcc
acgtcaaccaaagaagcttcaaactttggttaactgtaaagccggagagcttgaatgctc
cagcccttgctttctatgcccaaacttctgaaacaacgacgaaacgtgaggaggtggggg
cagagttatcacggagcagctgtcggctcacggagctcgcagcagattttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGCGACGCGACCGCGTCGCTC 289 367 32 Antisense
CTGGCTGGCCGGGAGAGAGGACGAG 387 241 60 Antisense
GAAAGCGCACTTGCACCAAACATCA 613 359 103 Antisense
TGAGGCGGCGGCGGGGAGAGATAGA 353 565 135 Antisense
GAACTTTCGCGAAGGGCTTCAGCTC 383 349 196 Antisense
TTCAGCTCTTCCACGGGTAATGTCA 640 687 213 Antisense
GTAATGTCAGCTTGTCCCATTGACC 272 457 229 Antisense
TCGCCACGTCAACCAAAGAAGCTTC 191 597 267 Antisense
TGCTTTCTATGCCCAAACTTCTGAA 510 579 339 Antisense
TATCACGGAGCAGCTGTCGGCTCAC 444 657 398 Antisense
CACGGAGCTCGCAGCAGATTTTCGG 179 199 420 Antisense
Sequence Source Affymetrix Proprietary Database