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[185454_s_at] --- /// --- /// --- /// --- /// ---

Description F38A5.10 /REP_DB=WormBase Gene ID /WP=CE10044 /TR=Q94210 /GB=AAB09152.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 55      6grp_highest_nonorm > 91      6grp_total > 92      4grp_total > 56      6grp_highest_sub > 05      6grp_cgc > 98      6grp_high1_sub > 05      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 754
1 2 3 4 range
A 77
(-2.8)
P 		270.2
(-1.3)
P 		802.4
(3)
P 		56
(-3)
A 		746
B 103.1
(-2.5)
P 		441.3
(0.5)
P 		728.2
(3)
P 		48.1
(-3)
A 		680
C 83
(-3)
P 		417.4
(0.4)
P 		681.8
(3)
P 		80.9
(-3)
P 		601
avr 87.7
(-2.8) 		376.3
(-0.2) 		737.5
(3) 		61.7
(-3) 		676

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 86.3
(-2.7)
P 		111.5
(-2.2)
P 		167.9
(-1.3)
P 		220.1
(-0.4)
P 		416.2
(3)
P 		67.5
(-3)
P 		349
B 83.2
(-3)
P 		118.2
(-2.4)
P 		168.2
(-1.5)
P 		250.4
(-0.1)
P 		431.7
(3)
P 		96.6
(-2.8)
P 		349
C 89.1
(-3)
P 		160.4
(-1.4)
P 		104.8
(-2.7)
P 		359.5
(3)
P 		356.5
(2.9)
P 		95.5
(-2.9)
P 		270
avr 86.2
(-3) 		130
(-2.2) 		147
(-1.8) 		276.7
(0.6) 		401.5
(3) 		86.5
(-3) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 28
(-2.4)
P 		58.7
(-1.5)
P 		209.8
(3)
P 		8.2
(-3)
A 		202
B 32.9
(-2.1)
P 		109
(0.7)
P 		168.7
(3)
P 		10.2
(-3)
A 		159
C 27.5
(-2.6)
P 		120
(-0.2)
P 		237.6
(3)
P 		13.6
(-3)
P 		224
avr 29.5
(-2.4) 		95.9
(-0.4) 		205.4
(3) 		10.7
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 15.9
(-3)
P 		39.7
(-1.7)
P 		36.6
(-1.9)
P 		55.8
(-0.8)
P 		125.6
(3)
P 		16.4
(-3)
P 		110
B 28.9
(-3)
P 		39.3
(-2.6)
P 		40.8
(-2.5)
P 		66.3
(-1.5)
P 		175.4
(3)
P 		36
(-2.7)
P 		147
C 33
(-2.6)
P 		48.9
(-1.5)
P 		26.7
(-3)
P 		72.3
(0.1)
P 		115.4
(3)
P 		32
(-2.6)
P 		89
avr 25.9
(-3) 		42.6
(-2.1) 		34.7
(-2.5) 		64.8
(-0.9) 		138.8
(3) 		28.1
(-2.9) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185454_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10785
Sequence Type Exemplar sequence
Representative Public ID F38A5.10 NCBI
Target Description F38A5.10 /REP_DB=WormBase Gene ID /WP=CE10044 /TR=Q94210 /GB=AAB09152.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068609(11), NM_068612(11), NM_068611(11), NM_068607(11), NM_001028019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068609 NCBI Caenorhabditis elegans Nematode Specific Peptide family, group B family member (nspb-3) (nspb-3) mRNA, complete cds. 11/11 A 
NM_068612 NCBI Caenorhabditis elegans Nematode Specific Peptide family, group B family member (nspb-5) (nspb-5) mRNA, complete cds. 11/11 None
NM_068611 NCBI Caenorhabditis elegans Nematode Specific Peptide family, group B family member (nspb-4) (nspb-4) mRNA, complete cds. 11/11 None
NM_068607 NCBI Caenorhabditis elegans Nematode Specific Peptide family, group B family member (nspb-2) (nspb-2) mRNA, complete cds. 11/11 A 
NM_001028019 NCBI Caenorhabditis elegans Nematode Specific Peptide family, group B family member (nspb-1) (nspb-1) mRNA, complete cds. 11/11 None
SNAP00000010565 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6588219:6591053:-1 10/11 None
SNAP00000010566 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6591727:6592002:1 10/11 None
SNAP00000010568 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6594639:6594914:-1 10/11 None
SNAP00000010571 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6598242:6598515:1 10/11 None
SNAP00000010572 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6599206:6599476:1 10/11 None
GENEFINDER00000010577 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6591703:6592002:1 11/11 None
GENEFINDER00000010579 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6590780:6591077:-1 11/11 None
GENEFINDER00000010584 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6599182:6599476:1 11/11 None
GENEFINDER00000010586 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6598218:6598515:1 11/11 None
GENEFINDER00000010587 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6594639:6594938:-1 11/11 None
F38A5.12 ENSEMBL cdna:known chromosome:CEL140:IV:6591703:6592002:1 gene:F38A5.12 11/11 A 
F38A5.5 ENSEMBL cdna:known chromosome:CEL140:IV:6594639:6594938:-1 gene:F38A5.5 11/11 A 
F38A5.10 ENSEMBL cdna:known chromosome:CEL140:IV:6598218:6598515:1 gene:F38A5.10 11/11 None
F38A5.9 ENSEMBL cdna:known chromosome:CEL140:IV:6599182:6599476:1 gene:F38A5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F38A5.14 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6598223-6598521(+) 100.0 100.0
chrIV:6591708-6592008(+) 97.19 97.19
chrIV:6599187-6599478(+) 95.58 95.58
chrIV:6590785-6591083(-) 99.2 99.2
chrIV:6594644-6594944(-) 97.19 97.19
Public Domain and Genome References
Gene Title




Gene Symbol nspb-4
nspb-2
nspb-1
nspb-3
nspb-5
Ensembl F38A5.12
F38A5.5
F38A5.10
F38A5.9
Entrez Gene 185443 Entrez gene
185445 Entrez gene
185446 Entrez gene
185448 Entrez gene
3564940 Entrez gene
SwissProt Q94210 EMBL-EBI
Q94214 EMBL-EBI
Q7YXG9 EMBL-EBI
Q94212 EMBL-EBI
Q94209 EMBL-EBI
WormBase CE10044 Wormbase
CE10048 Wormbase
CE38598 Wormbase
CE10034 Wormbase
CE10042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68382 Galectin protein 11, isoform a [Caenorhabditis elegans] ref|NP_001023191.1| gaLECtin family member (lec-11) [Caenorhabditis elegans] 2.0E-89
blast BAB11967.1 galectin LEC-11 [Caenorhabditis elegans] 3.0E-89
blast T29894 hypothetical protein F38A5.3 - Caenorhabditis elegans 5.0E-80
blast AAB09152 Nematode specific peptide family, group b protein 4 [Caenorhabditis elegans] ref|NP_501012.1| Nematode Specific Peptide family, group B family member (nspb-4) [Caenorhabditis elegans] 1.0E-20
blast AAB09149 Nematode specific peptide family, group b protein 3 [Caenorhabditis elegans] ref|NP_501010.1| Nematode Specific Peptide family, group B family member (nspb-3) [Caenorhabditis elegans] 2.0E-20
blast AAB09156 Nematode specific peptide family, group b protein 2 [Caenorhabditis elegans] ref|NP_501008.1| Nematode Specific Peptide family, group B family member (nspb-2) [Caenorhabditis elegans] 2.0E-20
blast AAQ01533 Nematode specific peptide family, group b protein 1 [Caenorhabditis elegans] ref|NP_001023190.1| Nematode Specific Peptide family, group B family member (nspb-1) [Caenorhabditis elegans] 2.0E-20
blast T29894 hypothetical protein F38A5.3 - Caenorhabditis elegans 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 1.5E-62
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 3.5E-61
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 6.7E-63
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 5.7E-59
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 9.4E-63
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 5.8E-36
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 3.3E-7
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 4.9E-53
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 1.0E-51
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 3.5E-53
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 2.1E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501010.1 2 7-24,39-61
NP_501013.1 2 7-29,39-61
NP_501012.1 2 7-24,39-61
NP_501008.1 2 7-24,39-61
NP_001023190.1 2 7-24,39-61
F38A5.12 2 7-24,39-61
F38A5.5 2 7-24,39-61
F38A5.10 2 7-24,39-61
F38A5.9 2 7-29,39-61
GENEFINDER00000010577 2 7-24,39-61
GENEFINDER00000010579 2 7-24,39-61
GENEFINDER00000010584 2 7-29,39-61
GENEFINDER00000010586 2 7-24,39-61
GENEFINDER00000010587 2 7-24,39-61
Sequence
Target Sequence 
>C. ELEGANS:185454_S_AT
ccacaattgtcatgatttttgcccttttctgtatttcatcgtgtcaagttttatatactc
ctgaagttgtatcatctccatattattatgcttcatctccagttgcttctgcttatccat
atgcttatgcttatggagctgctgcttatccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACAATTGTCATGATTTTTGCCCT 142 275 26 Antisense
CCCTTTTCTGTATTTCATCGTGTCA 641 259 47 Antisense
TTTCTGTATTTCATCGTGTCAAGTT 248 671 51 Antisense
GTTGTATCATCTCCATATTATTATG 411 437 91 Antisense
ATATTATTATGCTTCATCTCCAGTT 414 19 105 Antisense
TATTATGCTTCATCTCCAGTTGCTT 694 661 109 Antisense
TCCAGTTGCTTCTGCTTATCCATAT 15 591 123 Antisense
AGTTGCTTCTGCTTATCCATATGCT 313 65 126 Antisense
GCTTCTGCTTATCCATATGCTTATG 198 305 130 Antisense
CATATGCTTATGCTTATGGAGCTGC 7 215 143 Antisense
CTTATGGAGCTGCTGCTTATCCAAC 187 223 155 Antisense
Sequence Source Affymetrix Proprietary Database