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[185452_at]

Description Y106G6D.3 /REP_DB=WormBase Gene ID /WP=CE19301 /TR=Q9XX61 /GB=CAA20976.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 97      4grp_total > 34      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 41.9
(-3)
P 		76.8
(2.6)
P 		79.6
(3)
P 		62.4
(0.3)
A 		38
B 42.7
(2.2)
P 		47.2
(3)
A 		17.7
(-2)
A 		11.5
(-3)
A 		36
C 20.4
(-3)
A 		47
(-0.3)
A 		49
(-0.1)
P 		79
(3)
A 		59
avr 35
(-3) 		57
(3) 		48.8
(0.8) 		51
(1.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 81.9
(-0.4)
P 		46.3
(-3)
A 		74.5
(-1)
P 		61.1
(-1.9)
P 		69
(-1.4)
P 		129.8
(3)
P 		84
B 44.8
(-3)
A 		45.3
(-2.9)
P 		59.5
(-1.4)
P 		74.2
(0.2)
P 		100.3
(3)
P 		78.3
(0.6)
P 		56
C 36.6
(-2.8)
A 		65.5
(0.9)
P 		35.3
(-3)
A 		42.8
(-2)
A 		76.1
(2.3)
P 		81.9
(3)
P 		47
avr 54.4
(-2.7) 		52.4
(-3) 		56.4
(-2.5) 		59.4
(-2.1) 		81.8
(1) 		96.7
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.3
(0.2)
P 		16.7
(0.9)
P 		20.8
(3)
P 		9.1
(-3)
A 		12
B 13.6
(3)
P 		11.7
(2)
A 		4.1
(-2.1)
A 		2.4
(-3)
A 		11
C 6.8
(-3)
A 		13.5
(0.9)
A 		17.1
(3)
P 		13.3
(0.8)
A 		10
avr 11.9
(0.8) 		14
(3) 		14
(3) 		8.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.1
(-3)
P 		16.5
(-2.5)
A 		16.2
(-2.6)
P 		15.5
(-2.9)
P 		20.8
(-0.9)
P 		31.6
(3)
P 		17
B 15.6
(-2.7)
A 		15.1
(-2.8)
P 		14.4
(-3)
P 		19.7
(-1.8)
P 		40.7
(3)
P 		29.2
(0.4)
P 		26
C 13.6
(-1.4)
A 		20
(0.6)
P 		9
(-2.9)
A 		8.6
(-3)
A 		24.6
(2.1)
P 		27.4
(3)
P 		19
avr 14.8
(-2.4) 		17.2
(-1.5) 		13.2
(-3) 		14.6
(-2.5) 		28.7
(2.7) 		29.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2373
Sequence Type Exemplar sequence
Representative Public ID Y106G6D.3 NCBI
Target Description Y106G6D.3 /REP_DB=WormBase Gene ID /WP=CE19301 /TR=Q9XX61 /GB=CAA20976.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060266 NCBI Caenorhabditis elegans Y106G6D.3 (Y106G6D.3) mRNA, complete cds. 11/11 None
SNAP00000020348 ENSEMBL cdna:SNAP chromosome:CEL140:I:10120302:10121362:-1 11/11 None
GENEFINDER00000020359 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10120302:10122319:-1 11/11 None
Y106G6D.3 ENSEMBL cdna:known chromosome:CEL140:I:10120204:10122319:-1 gene:Y106G6D.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10120232-10122250(-) 98.02 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6D.3
Entrez Gene 190916 Entrez gene
SwissProt Q9XX61 EMBL-EBI
WormBase CE19301 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256915_AT RNA recognition motif (RRM)-containing protein at
CANINE:1588401_AT similar to Splicing factor, arginine/serine-rich 4 cfa
CANINE:1585806_AT similar to Splicing factor, arginine/serine-rich 4 cfa
CANINE_2:CFA.20306.1.S1_S_AT similar to Splicing factor, arginine/serine-rich 4 cfa
CANINE_2:CFA.6375.1.A1_AT similar to Splicing factor, arginine/serine-rich 4 cfa
CANINE_2:CFAAFFX.18117.1.S1_S_AT similar to Splicing factor, arginine/serine-rich 4 cfa
MU11KSUBA:AA230396_S_AT splicing factor, arginine/serine-rich 4 (SRp75) mm
MG-U74AV2:102093_F_AT splicing factor, arginine/serine-rich 4 (SRp75) mm
MG-U74AV2:104754_AT splicing factor, arginine/serine-rich 4 (SRp75) mm
MOE430A:1448778_AT splicing factor, arginine/serine-rich 4 (SRp75) mm
MOUSE430A_2:1448778_AT splicing factor, arginine/serine-rich 4 (SRp75) mm
MOUSE430_2:1448778_AT splicing factor, arginine/serine-rich 4 (SRp75) mm
MU19KSUBA:TC17168_AT Splicing factor, arginine/serine-rich 4 (SRp75), mRNA (cDNA clone MGC:30919 IMAGE:4016087) mm
Protein Similarities
Method ID Description E-Value
blast CAA20976 Hypothetical protein Y106G6D.3 [Caenorhabditis elegans] ref|NP_492667.1| Y106G6D.3 [Caenorhabditis elegans] 1.0E-118
blast CAA20976 Hypothetical protein Y106G6D.3 [Caenorhabditis elegans] ref|NP_492667.1| Y106G6D.3 [Caenorhabditis elegans] 1.0E-97
blast CAE60372 Hypothetical protein CBG03972 [Caenorhabditis briggsae] 3.0E-32
blast CAE60372 Hypothetical protein CBG03972 [Caenorhabditis briggsae] 3.0E-31
blast CAE63733 Hypothetical protein CBG08261 [Caenorhabditis briggsae] 2.0E-26
blast CAE63733 Hypothetical protein CBG08261 [Caenorhabditis briggsae] 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:185452_AT
aaattcagaccgtttccagtgcaatgagaaaggttgtcaaaagggtcaatgttcgagtga
agcacgttatgctcaaaatgtcagacgctctgcttctcaaaaatcattgagagcgccaaa
ggagaacaaattgaaggatgggtcggcaaagacacctaaagtttcatccacaacaacgcc
acccgttgacaccatgagaacaccaacacaagagcctcgatcaatctacattgaaactgg
gaaatcgacatatggagaagcgtcgaagacttcgggaaataatgcaagatccgtttactt
agcggatccagtttctgctcctaaggcatattctgtaactccacagaagtctacgaaaac
tccttcggagagaaagtcggagaaaaacttggagaaaaaggcatcgaaaaaatcaatcaa
gtcatcaagatctggaattcagcaacgcgaagtcacaaaaacgtcatcgaaacattcttc
aaaacattcgaaggccccatcatcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCAGACCGTTTCCAGTGCAAT 128 117 1068 Antisense
GTTATGCTCAAAATGTCAGACGCTC 438 447 1133 Antisense
GACGCTCTGCTTCTCAAAAATCATT 266 381 1151 Antisense
GGATGGGTCGGCAAAGACACCTAAA 6 499 1203 Antisense
GACACCTAAAGTTTCATCCACAACA 37 369 1218 Antisense
ACCCGTTGACACCATGAGAACACCA 371 87 1248 Antisense
GAGAACACCAACACAAGAGCCTCGA 33 393 1263 Antisense
TACTTAGCGGATCCAGTTTCTGCTC 475 643 1363 Antisense
GTTTCTGCTCCTAAGGCATATTCTG 228 451 1378 Antisense
GGAATTCAGCAACGCGAAGTCACAA 280 533 1501 Antisense
ACATTCGAAGGCCCCATCATCAAAG 309 105 1551 Antisense
Sequence Source Affymetrix Proprietary Database