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[185450_s_at]

Description Y106G6G.2 /REP_DB=WormBase Gene ID /WP=CE23212 /TR=O18093 /GB=CAA22058.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 535.4
(3)
P 		209
(-1.8)
P 		125.2
(-3)
P 		242.5
(-1.3)
A 		410
B 343.6
(3)
P 		218
(-0.3)
P 		117.3
(-3)
A 		203.3
(-0.7)
P 		226
C 512.4
(3)
P 		199.3
(-2.6)
P 		177.6
(-3)
P 		241.6
(-1.9)
A 		335
avr 463.8
(3) 		208.8
(-1.7) 		140
(-3) 		229.1
(-1.3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 345.4
(3)
P 		278.5
(1.2)
P 		122.2
(-3)
P 		198.5
(-0.9)
P 		200.1
(-0.9)
P 		169.6
(-1.7)
P 		223
B 399.5
(3)
P 		240.7
(-0.4)
P 		181.2
(-1.7)
P 		166.8
(-2)
P 		120.6
(-3)
P 		228.4
(-0.7)
P 		279
C 311.1
(3)
P 		306.6
(2.8)
P 		240.4
(-0)
P 		206.4
(-1.5)
P 		171.6
(-3)
P 		184.3
(-2.5)
P 		140
avr 352
(3) 		275.3
(0.6) 		181.3
(-2.5) 		190.6
(-2.2) 		164.1
(-3) 		194.1
(-2) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 194.9
(3)
P 		45.4
(-2.5)
P 		32.7
(-3)
P 		35.5
(-2.9)
A 		162
B 109.6
(3)
P 		53.8
(-1.1)
P 		27.2
(-3)
A 		43.3
(-1.8)
P 		82
C 169.6
(3)
P 		57.3
(-2.2)
P 		61.9
(-2)
P 		40.7
(-3)
A 		129
avr 158
(3) 		52.2
(-2.4) 		40.6
(-3) 		39.8
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 63.7
(0.1)
P 		99.1
(3)
P 		26.6
(-3)
P 		50.4
(-1)
P 		60.4
(-0.2)
P 		41.3
(-1.8)
P 		73
B 139
(3)
P 		80.1
(-0.7)
P 		44
(-3)
P 		44.2
(-3)
P 		49
(-2.7)
P 		85.2
(-0.4)
P 		95
C 115.3
(3)
P 		93.6
(1.2)
P 		61.2
(-1.4)
P 		41.5
(-3)
P 		55.5
(-1.9)
P 		61.7
(-1.4)
P 		74
avr 106
(3) 		90.9
(1.5) 		43.9
(-3) 		45.4
(-2.9) 		55
(-1.9) 		62.7
(-1.2) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185450_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1578
Sequence Type Exemplar sequence
Representative Public ID Y106G6G.2 NCBI
Target Description Y106G6G.2 /REP_DB=WormBase Gene ID /WP=CE23212 /TR=O18093 /GB=CAA22058.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060301 NCBI Caenorhabditis elegans T20F10.5 (T20F10.5) mRNA, complete cds. 11/11 None
SNAP00000031263 ENSEMBL cdna:SNAP chromosome:CEL140:I:10308799:10310883:-1 11/11 None
GENEFINDER00000031264 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10308799:10313616:-1 11/11 None
T20F10.5 ENSEMBL cdna:known chromosome:CEL140:I:10308730:10311067:-1 gene:T20F10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10308729-10335810(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F10.5
Entrez Gene 259396 Entrez gene
SwissProt Q9NAN4 EMBL-EBI
WormBase CE35189 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76410 Hypothetical protein T20F10.5 [Caenorhabditis elegans] ref|NP_492702.2| T20F10.5 [Caenorhabditis elegans] 0.0
blast CAE73790 Hypothetical protein CBG21340 [Caenorhabditis briggsae] 0.0
blast CAB04746 Hypothetical protein T20F10.4 [Caenorhabditis elegans] ref|NP_492703.1| T20F10.4 [Caenorhabditis elegans] 3.0E-77
Sequence
Target Sequence 
>C. ELEGANS:185450_S_AT
gctctagtaagctctaacctgaccaaaactatgagtttgcttcgaaggttcgagaaaaca
aagaacacagagctactaccagaaatagcaaaagctgtgaaatcacgtagtgttgactta
aagagtgtggagtttgaagtgagcaccagaagaagtgcttttgtcactagagaacatgct
attacacaataccacctggttcccgttgacaatggagaggagaatgcatacaaattagtg
tctcaagaatttgtagacggagcattgagtgaatatgacaagcatcgtgaccgcctgaaa
cccttcatcccggatcgtcgtaacccattccaacacgcaatcgatgattcagacacagtt
tccattgattcaaaaactgaagatttcgatgaaattcgtctggctgcctatcgagatatc
tgcttgattcctcttcgatatgtgtctgataacttgctccgtgagcatcttccagatttc
ttgcccccagttactcaaattgtgttaagttctcctgatcttgctgttagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTAGTAAGCTCTAACCTGACCA 38 301 4402 Antisense
CACCTGGTTCCCGTTGACAATGGAG 400 199 4594 Antisense
AATATGACAAGCATCGTGACCGCCT 479 173 4673 Antisense
CCCATTCCAACACGCAATCGATGAT 578 259 4725 Antisense
GATTCAGACACAGTTTCCATTGATT 522 431 4747 Antisense
AATTCGTCTGGCTGCCTATCGAGAT 616 177 4794 Antisense
TATCGAGATATCTGCTTGATTCCTC 660 657 4810 Antisense
GATTCCTCTTCGATATGTGTCTGAT 542 433 4827 Antisense
GTGAGCATCTTCCAGATTTCTTGCC 619 483 4862 Antisense
TTGCCCCCAGTTACTCAAATTGTGT 163 703 4882 Antisense
AGTTCTCCTGATCTTGCTGTTAGAC 654 63 4909 Antisense
Sequence Source Affymetrix Proprietary Database