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[185449_s_at]

Description T08B2.11 /REP_DB=WormBase Gene ID /WP=CE13439 /TR=Q9GYS6 /GB=AAG00018.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 27.1
(-3)
A 		31.3
(-2.8)
A 		55.4
(-1.9)
A 		177
(3)
P 		150
B 44
(-0.8)
P 		3.8
(-3)
A 		9.6
(-2.7)
A 		113.7
(3)
P 		110
C 69.7
(-0.4)
M 		37.1
(-2.8)
A 		34.2
(-3)
A 		116.6
(3)
P 		82
avr 46.9
(-1.8) 		24.1
(-3) 		33.1
(-2.5) 		135.8
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 50.9
(-2.6)
A 		29.6
(-3)
A 		102.2
(-1.6)
P 		124.8
(-1.1)
P 		229.5
(0.9)
P 		335.9
(3)
P 		306
B 4.8
(-3)
A 		47.7
(-2.4)
A 		109.9
(-1.5)
P 		138.4
(-1.1)
P 		296.3
(1.2)
P 		423.8
(3)
P 		419
C 23.3
(-3)
A 		45.7
(-2.6)
P 		47
(-2.6)
A 		101.7
(-1.6)
P 		213.6
(0.4)
P 		361.3
(3)
P 		338
avr 26.3
(-3) 		41
(-2.7) 		86.4
(-2) 		121.6
(-1.4) 		246.5
(0.8) 		373.7
(3) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 9.9
(-2)
A 		6.8
(-3)
A 		14.5
(-0.6)
A 		25.9
(3)
P 		19
B 14
(0.4)
P 		0.9
(-3)
A 		2.2
(-2.7)
A 		24.2
(3)
P 		23
C 23.1
(3)
M 		10.7
(-3)
A 		11.9
(-2.4)
A 		19.7
(1.4)
P 		12
avr 15.7
(0.3) 		6.1
(-3) 		9.5
(-1.8) 		23.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 9.4
(-3)
A 		10.5
(-2.9)
A 		22.3
(-1.9)
P 		31.7
(-1.2)
P 		69.3
(2)
P 		81.8
(3)
P 		72
B 1.7
(-3)
A 		15.9
(-2.5)
A 		26.7
(-2)
P 		36.6
(-1.7)
P 		120.4
(1.6)
P 		158
(3)
P 		156
C 8.6
(-3)
A 		13.9
(-2.7)
P 		12
(-2.8)
A 		20.5
(-2.4)
P 		69.1
(0.2)
P 		120.9
(3)
P 		112
avr 6.6
(-3) 		13.4
(-2.6) 		20.3
(-2.3) 		29.6
(-1.8) 		86.3
(1.2) 		120.2
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185449_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2351
Sequence Type Exemplar sequence
Representative Public ID T08B2.11 NCBI
Target Description T08B2.11 /REP_DB=WormBase Gene ID /WP=CE13439 /TR=Q9GYS6 /GB=AAG00018.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059395 NCBI Caenorhabditis elegans T08B2.11 (T08B2.11) mRNA, complete cds. 11/11 None
SNAP00000035006 ENSEMBL cdna:SNAP chromosome:CEL140:I:6229420:6231008:-1 11/11 None
GENEFINDER00000035013 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6229420:6231008:-1 11/11 None
T08B2.11 ENSEMBL cdna:known chromosome:CEL140:I:6229420:6231008:-1 gene:T08B2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6229348-6230937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08B2.11
Entrez Gene 172314 Entrez gene
SwissProt Q9GYS6 EMBL-EBI
WormBase CE13439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491796 T08B2.11 [Caenorhabditis elegans] gb|AAG00018.1| Hypothetical protein T08B2.11 [Caenorhabditis elegans] 0.0
blast CAB03093 Hypothetical protein F42G4.2 [Caenorhabditis elegans] ref|NP_496775.2| F42G4.2 [Caenorhabditis elegans] 1.0E-90
blast CAA92604 Hypothetical protein F44D12.8 [Caenorhabditis elegans] ref|NP_501809.1| F44D12.8 [Caenorhabditis elegans] 2.0E-84
Sequence
Target Sequence 
>C. ELEGANS:185449_S_AT
ggagagcctgtatgggtgactgacaagccgcctagtgaatgtgaaaaggatgaggacgga
gtaataatcacaaacccagaattggcagctgctcttgcagaagataatttggaaatggat
gaaaggaaatatctggattatgtggaggattatatgtcgtgtgcaatgcctagaggtcca
gctttaccagaaaaccatcaattcgatccactcgctacagttgagaagttagcgtctaat
agtgagtatgttactcaggatacagtaacctataacactgttaaaaatttgttcgatttg
agtgaagatgcgattaaacggtttgctatgaaacgagatggactggatgaaagagcaaga
ggcattaaagaaattacggcttccgaaacaccaagtactacatccattgttccaccaaag
gatccggatcagattcagcagaagacagctttgacgtcgattacatttaatctaatcaat
aatatcgttttacactatgatcgccatcatcctattgcctcaattcaaaaatgccgcaag
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAGCCTGTATGGGTGACTGACA 175 519 682 Antisense
GACTGACAAGCCGCCTAGTGAATGT 23 375 699 Antisense
AAACCCAGAATTGGCAGCTGCTCTT 598 125 753 Antisense
GTCGTGTGCAATGCCTAGAGGTCCA 418 471 837 Antisense
TGCCTAGAGGTCCAGCTTTACCAGA 666 585 848 Antisense
CAATTCGATCCACTCGCTACAGTTG 74 181 880 Antisense
TACGGCTTCCGAAACACCAAGTACT 502 615 1056 Antisense
TCCATTGTTCCACCAAAGGATCCGG 367 591 1084 Antisense
AAGGATCCGGATCAGATTCAGCAGA 251 161 1099 Antisense
GAAGACAGCTTTGACGTCGATTACA 53 341 1122 Antisense
GCCTCAATTCAAAAATGCCGCAAGA 198 283 1198 Antisense
Sequence Source Affymetrix Proprietary Database