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[185446_at]

Description ZK1240.3 /REP_DB=WormBase Gene ID /WP=CE15533 /TR=O16680 /GB=AAB66141.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 62      4grp_total > 04      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 181.7
(-1.7)
P 		117.4
(-3)
P 		122.8
(-2.9)
P 		409.3
(3)
P 		292
B 172.3
(-2.6)
P 		171.6
(-2.6)
P 		146.5
(-3)
P 		499
(3)
P 		353
C 235.5
(-0.7)
P 		154.8
(-2.5)
P 		130.8
(-3)
P 		400.1
(3)
P 		269
avr 196.5
(-1.7) 		147.9
(-2.7) 		133.4
(-3) 		436.1
(3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 173.8
(-3)
P 		218.1
(-1.8)
P 		397.9
(3)
P 		287.4
(0)
P 		195.6
(-2.4)
P 		176.6
(-2.9)
P 		224
B 154.4
(-3)
P 		224.4
(-1.3)
P 		394.9
(3)
P 		250.3
(-0.6)
P 		228.2
(-1.2)
P 		201.9
(-1.8)
P 		241
C 162.3
(-3)
P 		220.2
(-0.8)
P 		310.7
(2.5)
P 		322.8
(3)
P 		227.3
(-0.6)
P 		230
(-0.5)
P 		161
avr 163.5
(-3) 		220.9
(-1.3) 		367.8
(3) 		286.8
(0.6) 		217
(-1.4) 		202.8
(-1.8) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 66.1
(3)
P 		25.5
(-3)
P 		32.1
(-2)
P 		59.9
(2.1)
P 		41
B 55
(-1.3)
P 		42.4
(-2.3)
P 		33.9
(-3)
P 		106.3
(3)
P 		72
C 78
(3)
P 		44.5
(-3)
P 		45.6
(-2.8)
P 		67.5
(1.1)
P 		34
avr 66.4
(1.3) 		37.5
(-3) 		37.2
(-3) 		77.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 32
(-3)
P 		77.6
(2)
P 		86.7
(3)
P 		72.9
(1.5)
P 		59
(-0)
P 		43
(-1.8)
P 		55
B 53.7
(-3)
P 		74.7
(-0)
P 		95.9
(3)
P 		66.3
(-1.2)
P 		92.7
(2.5)
P 		75.3
(0.1)
P 		42
C 60.2
(-3)
P 		67.2
(-0.8)
P 		79.1
(3)
P 		64.9
(-1.5)
P 		73.5
(1.2)
P 		77
(2.3)
P 		19
avr 48.6
(-3) 		73.2
(0.8) 		87.2
(3) 		68
(0) 		75.1
(1.1) 		65.1
(-0.4) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5225
Sequence Type Exemplar sequence
Representative Public ID ZK1240.3 NCBI
Target Description ZK1240.3 /REP_DB=WormBase Gene ID /WP=CE15533 /TR=O16680 /GB=AAB66141.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061838(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061838 NCBI Caenorhabditis elegans ZK1240.3 (ZK1240.3) mRNA, complete cds. 9/11 None
SNAP00000039224 ENSEMBL cdna:SNAP chromosome:CEL140:II:2320706:2321671:1 9/11 None
GENEFINDER00000039230 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2318222:2321671:1 9/11 None
ZK1240.3 ENSEMBL cdna:known chromosome:CEL140:II:2320331:2321860:1 gene:ZK1240.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2318220-2321670(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1240.3
Entrez Gene 173588 Entrez gene
SwissProt O16680 EMBL-EBI
WormBase CE33496 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast H88071 protein ZK1240.3 [imported] - Caenorhabditis elegans 0.0
blast AAL11109 Hypothetical protein ZK1240.3 [Caenorhabditis elegans] ref|NP_494239.2| ZK1240.3 [Caenorhabditis elegans] 1.0E-170
blast H88071 protein ZK1240.3 [imported] - Caenorhabditis elegans 1.0E-155
blast AAL11109 Hypothetical protein ZK1240.3 [Caenorhabditis elegans] ref|NP_494239.2| ZK1240.3 [Caenorhabditis elegans] 1.0E-149
blast AAL11109 Hypothetical protein ZK1240.3 [Caenorhabditis elegans] ref|NP_494239.2| ZK1240.3 [Caenorhabditis elegans] 1.0E-106
blast H88071 protein ZK1240.3 [imported] - Caenorhabditis elegans 1.0E-103
blast AAL11110 Hypothetical protein ZK1240.9 [Caenorhabditis elegans] ref|NP_494238.2| ZK1240.9 [Caenorhabditis elegans] 1.0E-102
blast AAB66144 Hypothetical protein ZK1240.8 [Caenorhabditis elegans] ref|NP_494242.1| ZK1240.8 [Caenorhabditis elegans] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.3E-5
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.7E-8
Sequence
Target Sequence 
>C. ELEGANS:185446_AT
gtattttctctatttgtctggcattcaagtagacacttgctctgcaaaagacaagtttat
gtgccgaacttgtgaagagttcggaattcataaaggtcatgcaagaggattgttgatttc
ggaatctgcaaaacttagagaaattttggaatgcaggtttgaaaaaatggaattaaataa
tcgaatatttgaagaacaattgaaggaaattagaaaggctggtatcaccaatataacttt
gttcaatcagaaagtgggaaaagtaaatctacactttaaaaaactgcatcgtttgctctc
tgatcaagaagaagcgataattgagaaattagaactatcctcatcgaaaacatatgaact
caatttggagaaagagaataaattactacaatcgcaggaggaacttgccaagaaaatgga
gcgaatgaagacgcgtatcaatttgaacgatacacaattgttcatcgcaggtgttgaaat
gagaggaccgacatggtactatgaaaacgagcttccggactgtccgccagctacagacga
tgtggaagtgagactgccaactatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTTCTCTATTTGTCTGGCATT 406 453 1080 Antisense
GCATTCAAGTAGACACTTGCTCTGC 682 307 1100 Antisense
AAAAACTGCATCGTTTGCTCTCTGA 589 129 1358 Antisense
GCATCGTTTGCTCTCTGATCAAGAA 611 309 1365 Antisense
TTAGAACTATCCTCATCGAAAACAT 122 639 1408 Antisense
TACAATCGCAGGAGGAACTTGCCAA 300 641 1466 Antisense
GATACACAATTGTTCATCGCAGGTG 395 423 1528 Antisense
GAGAGGACCGACATGGTACTATGAA 35 393 1560 Antisense
ATGAAAACGAGCTTCCGGACTGTCC 163 41 1580 Antisense
GTCCGCCAGCTACAGACGATGTGGA 48 477 1601 Antisense
GTGGAAGTGAGACTGCCAACTATCA 562 491 1621 Antisense
Sequence Source Affymetrix Proprietary Database