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[185444_at]

Description T07C12.10 /REP_DB=WormBase Gene ID /WP=CE06392 /TR=Q22278 /GB=CAA98281.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 4.2
(-2.4)
A 		18.1
(3)
A 		2.6
(-3)
A 		3.3
(-2.7)
A 		16
B 28
(3)
A 		5
(-2.8)
A 		8.7
(-1.8)
A 		4.1
(-3)
A 		24
C 6.1
(1.3)
A 		1.9
(-3)
A 		5.6
(0.8)
A 		7.7
(3)
A 		6
avr 12.8
(3) 		8.3
(-0.5) 		5.6
(-2.5) 		5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 37.7
(3)
A 		5.6
(-2.6)
A 		27.4
(1.2)
A 		4.8
(-2.8)
A 		3.4
(-3)
A 		6
(-2.5)
A 		34
B 10.7
(3)
A 		6.5
(0.3)
A 		1.9
(-2.6)
A 		6.6
(0.4)
A 		1.3
(-3)
A 		2.3
(-2.4)
A 		9
C 5.3
(-2)
A 		6.9
(-1.3)
A 		17.2
(3)
A 		2.8
(-3)
A 		13.2
(1.3)
A 		3.2
(-2.8)
A 		14
avr 17.9
(3) 		6.3
(-1.9) 		15.5
(2) 		4.7
(-2.6) 		6
(-2.1) 		3.8
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-1.2)
A 		3.9
(3)
A 		0.7
(-2.6)
A 		0.5
(-3)
A 		3
B 8.9
(3)
A 		1.2
(-2.8)
A 		2
(-2.2)
A 		0.9
(-3)
A 		8
C 2
(3)
A 		0.5
(-3)
A 		1.9
(2.6)
A 		1.3
(0.2)
A 		2
avr 4.1
(3) 		1.9
(-1.1) 		1.5
(-1.9) 		0.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.9
(3)
A 		2
(-2)
A 		6
(2.1)
A 		1.2
(-2.8)
A 		1
(-3)
A 		1.5
(-2.5)
A 		6
B 3.7
(3)
A 		2.2
(0.2)
A 		0.5
(-3)
A 		1.7
(-0.8)
A 		0.5
(-3)
A 		0.9
(-2.3)
A 		3
C 2
(-0.8)
A 		2.1
(-0.6)
A 		4.4
(3)
A 		0.6
(-3)
A 		4.3
(2.8)
A 		1.1
(-2.2)
A 		4
avr 4.2
(3) 		2.1
(-1.2) 		3.6
(1.8) 		1.2
(-3) 		1.9
(-1.6) 		1.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12435
Sequence Type Exemplar sequence
Representative Public ID T07C12.10 NCBI
Target Description T07C12.10 /REP_DB=WormBase Gene ID /WP=CE06392 /TR=Q22278 /GB=CAA98281.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073163 NCBI Caenorhabditis elegans T07C12.10 (T07C12.10) mRNA, complete cds. 11/11 None
SNAP00000001533 ENSEMBL cdna:SNAP chromosome:CEL140:V:9962579:9962880:-1 9/11 None
GENEFINDER00000001538 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9962579:9962919:-1 11/11 None
T07C12.10 ENSEMBL cdna:known chromosome:CEL140:V:9962579:9962919:-1 gene:T07C12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9962578-9962919(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07C12.10
Entrez Gene 188218 Entrez gene
SwissProt Q22278 EMBL-EBI
WormBase CE06392 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98281 Hypothetical protein T07C12.10 [Caenorhabditis elegans] ref|NP_505564.1| T07C12.10 [Caenorhabditis elegans] 5.0E-38
blast CAA98281 Hypothetical protein T07C12.10 [Caenorhabditis elegans] ref|NP_505564.1| T07C12.10 [Caenorhabditis elegans] 5.0E-36
blast AAM97975 Hypothetical protein Y4C6A.4 [Caenorhabditis elegans] ref|NP_741402.1| Y4C6A.4 [Caenorhabditis elegans] 5.0E-16
blast CAE72288 Hypothetical protein CBG19417 [Caenorhabditis briggsae] 3.0E-15
blast AAM97975 Hypothetical protein Y4C6A.4 [Caenorhabditis elegans] ref|NP_741402.1| Y4C6A.4 [Caenorhabditis elegans] 4.0E-15
blast CAE72288 Hypothetical protein CBG19417 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:185444_AT
ttttctcatcattttgctttcaatgcagcttgtcgggtgtcagaagaagaagaacgatgc
taccaagttgaaaccacgtaacctcgataaacctggtggaggttctggtagagctccttt
cgataaaaaaccttcgtctgatgatattaagaatttggaacctgttaaagaagaaaaaat
ggccgaacgtcctgctgatgataatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCATCATTTTGCTTTCAATG 512 675 30 Antisense
GCTTTCAATGCAGCTTGTCGGGTGT 38 305 45 Antisense
GCAGCTTGTCGGGTGTCAGAAGAAG 60 315 54 Antisense
GAACGATGCTACCAAGTTGAAACCA 533 347 81 Antisense
CAAGTTGAAACCACGTAACCTCGAT 207 149 93 Antisense
CACGTAACCTCGATAAACCTGGTGG 221 1 104 Antisense
ACCTGGTGGAGGTTCTGGTAGAGCT 125 87 120 Antisense
TTCTGGTAGAGCTCCTTTCGATAAA 168 693 132 Antisense
AAAAAACCTTCGTCTGATGATATTA 465 129 154 Antisense
AAAAATGGCCGAACGTCCTGCTGAT 667 129 204 Antisense
GAACGTCCTGCTGATGATAATGAGA 3 349 214 Antisense
Sequence Source Affymetrix Proprietary Database