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[185443_at] 7TM chemoreceptor, srx family

Description F19B10.8 /REP_DB=WormBase Gene ID /WP=CE09475 /TR=O02072 /GB=AAB52927.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 03      6grp_cgc > 37      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 2.7
(-2.9)
A 		1.6
(-3)
A 		2.1
(-3)
A 		72.3
(3)
A 		71
B 26.4
(3)
A 		2
(-3)
A 		7.6
(-1.6)
A 		19.1
(1.2)
A 		24
C 3.8
(-3)
A 		15.3
(-2)
A 		4
(-3)
A 		76.3
(3)
A 		73
avr 11
(-2.3) 		6.3
(-2.8) 		4.6
(-3) 		55.9
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 2.3
(-2.9)
A 		3.5
(-2.7)
A 		44.1
(3)
A 		1.7
(-3)
A 		2.6
(-2.9)
A 		34.7
(1.7)
A 		42
B 22.6
(3)
A 		7.3
(-1.4)
A 		1.5
(-3)
A 		19.2
(2)
A 		4.8
(-2.1)
A 		14.5
(0.7)
A 		21
C 16.9
(-0.4)
A 		36.4
(3)
A 		1.8
(-3)
A 		6.6
(-2.2)
A 		20.7
(0.3)
A 		32.5
(2.3)
A 		35
avr 13.9
(-1.4) 		15.7
(-0.8) 		15.8
(-0.8) 		9.2
(-3) 		9.4
(-2.9) 		27.2
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-2.6)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		10.6
(3)
A 		10
B 8.4
(3)
A 		0.5
(-3)
A 		1.8
(-2)
A 		4.1
(-0.3)
A 		8
C 1.3
(-3)
A 		4.4
(-1.4)
A 		1.4
(-2.9)
A 		12.9
(3)
A 		12
avr 3.6
(-1.3) 		1.7
(-2.7) 		1.3
(-3) 		9.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.3
(-2.4)
A 		9.6
(3)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		8.4
(2.2)
A 		9
B 7.9
(3)
A 		2.4
(-1.4)
A 		0.4
(-3)
A 		5.1
(0.8)
A 		2
(-1.7)
A 		5.4
(1)
A 		8
C 6.3
(0.3)
A 		11.1
(3)
A 		0.5
(-3)
A 		1.3
(-2.5)
A 		6.7
(0.5)
A 		10.9
(2.9)
A 		11
avr 4.9
(-0.4) 		4.9
(-0.4) 		3.5
(-1.8) 		2.3
(-3) 		3.2
(-2.1) 		8.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4629
Sequence Type Exemplar sequence
Representative Public ID F19B10.8 NCBI
Target Description F19B10.8 /REP_DB=WormBase Gene ID /WP=CE09475 /TR=O02072 /GB=AAB52927.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062209(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062209 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-98) (srx-98) mRNA, complete cds. 10/11 None
GENEFINDER00000017134 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3669315:3671050:-1 10/11 None
F19B10.8 ENSEMBL cdna:known chromosome:CEL140:II:3669315:3671050:-1 gene:F19B10.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017118 3/11 Cross Hyb Matching Probes None
SNAP00000017119 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3669313-3671049(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-98
Ensembl F19B10.8
Entrez Gene 184673 Entrez gene
SwissProt O02072 EMBL-EBI
WormBase CE36432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52927 Serpentine receptor, class x protein 98 [Caenorhabditis elegans] ref|NP_494610.2| Serpentine Receptor, class X family member (srx-98) [Caenorhabditis elegans] 0.0
blast AAB52928 Serpentine receptor, class x protein 97 [Caenorhabditis elegans] ref|NP_494609.1| Serpentine Receptor, class X family member (srx-97) [Caenorhabditis elegans] 1.0E-128
blast CAE73848 Hypothetical protein CBG21423 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494610.2 7 53-75,95-117,132-154,167-189,209-231,263-285,295-317
F19B10.8 7 53-75,95-117,132-154,167-189,209-231,263-285,295-317
GENEFINDER00000017134 7 53-75,95-117,132-154,167-189,209-231,263-285,295-317
Sequence
Target Sequence 
>C. ELEGANS:185443_AT
acaatgggcctgtttcagtgttacaagtttactatggccccgagatgtttaacattttgt
tcaatcaaattgcagcttatggggtttatattcaaggaccaatgactcaagtttgtatat
cctttaatcgatttatggtgatttacttcgtgtcactggcaaaacgaaaaagtgggcgag
tgctgacgattacagcactctcaatttgctggacgatttctttgatagtcactgttatag
ggattccagacctcgttttgtattggatcatatgtttggcgattgtctcgaacactttca
acgtgatggttgccgtgaagcttatagtttcgtcgaaaaaatcacatttggacacgatgg
cctcgaaacgtcgcaagaaaacctccagaaacctcttcctccaatcctgcttccaagact
ggatatacctaattgacacggtcaacggaatgtacatctataactggttcaacagtgtta
cttggcaatttggctgcacaattttgtctaatttgatggttcacgtttctgatgggtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATGGGCCTGTTTCAGTGTTACA 425 113 332 Antisense
ACAAGTTTACTATGGCCCCGAGATG 122 113 354 Antisense
GGTGATTTACTTCGTGTCACTGGCA 351 497 468 Antisense
AAGTGGGCGAGTGCTGACGATTACA 339 159 501 Antisense
GACGATTACAGCACTCTCAATTTGC 172 379 516 Antisense
TAGGGATTCCAGACCTCGTTTTGTA 409 651 569 Antisense
GCGATTGTCTCGAACACTTTCAACG 489 291 610 Antisense
TCACATTTGGACACGATGGCCTCGA 298 627 673 Antisense
GAAACGTCGCAAGAAAACCTCCAGA 25 345 696 Antisense
CTCCAATCCTGCTTCCAAGACTGGA 419 235 730 Antisense
GATGGTTCACGTTTCTGATGGGTGC 673 407 846 Antisense
Sequence Source Affymetrix Proprietary Database