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[185442_at]

Description T01B11.1 /REP_DB=WormBase Gene ID /WP=CE12892 /TR=P91407 /GB=AAB37998.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 0      6grp_total > 13      4grp_total > 15      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 127.1
(2.6)
P 		43.9
(-3)
A 		133.6
(3)
P 		99.2
(0.7)
P 		90
B 134.7
(3)
P 		89.3
(-0.7)
P 		60.3
(-3)
M 		127.6
(2.4)
P 		74
C 114.2
(1.6)
P 		82
(-1.7)
P 		68.7
(-3)
A 		128.1
(3)
P 		59
avr 125.3
(3) 		71.7
(-3) 		87.5
(-1.2) 		118.3
(2.2) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 143
(3)
P 		106.6
(0.7)
P 		102.5
(0.5)
P 		75
(-1.3)
P 		59.2
(-2.2)
P 		47
(-3)
A 		96
B 94.7
(0.2)
P 		146
(3)
P 		67.8
(-1.3)
P 		94.8
(0.2)
P 		68.2
(-1.3)
P 		37.4
(-3)
A 		109
C 119.9
(2.4)
P 		128
(3)
P 		99.2
(0.8)
P 		79.1
(-0.7)
P 		56.8
(-2.4)
P 		48.8
(-3)
P 		79
avr 119.2
(2.4) 		126.9
(3) 		89.8
(0.3) 		83
(-0.2) 		61.4
(-1.8) 		44.4
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 46.3
(3)
P 		9.5
(-3)
A 		34.9
(1.1)
P 		14.5
(-2.2)
P 		37
B 42.9
(3)
P 		22
(-1.3)
P 		14
(-3)
M 		27.2
(-0.3)
P 		29
C 37.8
(3)
P 		23.6
(-2.3)
P 		24
(-2.1)
A 		21.6
(-3)
P 		16
avr 42.3
(3) 		18.4
(-3) 		24.3
(-1.5) 		21.1
(-2.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 26.4
(0.4)
P 		37.9
(3)
P 		22.3
(-0.5)
P 		19
(-1.3)
P 		17.9
(-1.5)
P 		11.4
(-3)
A 		27
B 32.9
(0.3)
P 		48.6
(3)
P 		16.5
(-2.6)
P 		25.1
(-1.1)
P 		27.7
(-0.6)
P 		14
(-3)
A 		35
C 44.5
(3)
P 		39
(1.8)
P 		25.2
(-1)
P 		15.9
(-3)
P 		18.4
(-2.5)
P 		16.3
(-2.9)
P 		29
avr 34.6
(1.5) 		41.8
(3) 		21.3
(-1.4) 		20
(-1.7) 		21.3
(-1.4) 		13.9
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8529
Sequence Type Exemplar sequence
Representative Public ID T01B11.1 NCBI
Target Description T01B11.1 /REP_DB=WormBase Gene ID /WP=CE12892 /TR=P91407 /GB=AAB37998.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069036(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069036 NCBI Caenorhabditis elegans T01B11.1 (T01B11.1) mRNA, complete cds. 9/11 None
GENEFINDER00000008426 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8447188:8448948:1 11/11 None
T01B11.1 ENSEMBL cdna:known chromosome:CEL140:IV:8447186:8449030:1 gene:T01B11.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008415 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8447193-8448954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B11.1
Entrez Gene 177645 Entrez gene
SwissProt P91407 EMBL-EBI
WormBase CE30115 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37998 Hypothetical protein T01B11.1 [Caenorhabditis elegans] ref|NP_501437.2| T01B11.1 [Caenorhabditis elegans] 0.0
blast AAB37998 Hypothetical protein T01B11.1 [Caenorhabditis elegans] ref|NP_501437.2| T01B11.1 [Caenorhabditis elegans] 1.0E-177
blast CAE71537 Hypothetical protein CBG18476 [Caenorhabditis briggsae] 1.0E-157
blast CAE71537 Hypothetical protein CBG18476 [Caenorhabditis briggsae] 1.0E-153
blast AAB92021 Hypothetical protein C04C3.6 [Caenorhabditis elegans] ref|NP_500342.1| C04C3.6 [Caenorhabditis elegans] 2.0E-35
blast AAB92021 Hypothetical protein C04C3.6 [Caenorhabditis elegans] ref|NP_500342.1| C04C3.6 [Caenorhabditis elegans] 4.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501437.2 7 10-32,45-67,87-109,130-149,176-198,252-274,294-316
T01B11.1 7 10-32,45-67,87-109,130-149,176-198,252-274,294-316
GENEFINDER00000008426 7 10-32,45-67,87-109,130-149,182-204,270-292,312-334
Sequence
Target Sequence 
>C. ELEGANS:185442_AT
gagaagcttttgtcacctatgcattcccgtttcttttcacaattgtcatggatattgctg
tactttatcaatcagctaattcaagtcaacattttttggaaaaaaatatattttttccaa
tttccaatttcccaagagtcttcgtcgtaatgtcagctgaaaatatccgatcagaacata
acacccttcttcatgtaaatgaaacagttaaaatacaatcatctcaatcaataaaacaat
caaatcgtcgacggcatcaagctgtcagaagatgtctaatgatggcaacaattcaagttt
ctctaaatgctccatactatacacttcaattatgtgatgaaatattcagtttgaggaatt
caacatctttgtatttatatttggatgcaattttgtattttatatatctccttcaatttt
ccatgatctattgctatacgaatctactggttgctccaagaggaaaaagttgtcgacaac
ctaacaagatgccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGCTTTTGTCACCTATGCATT 631 391 560 Antisense
TCCCGTTTCTTTTCACAATTGTCAT 490 597 584 Antisense
ATTTCCAATTTCCCAAGAGTCTTCG 441 17 679 Antisense
GAGTCTTCGTCGTAATGTCAGCTGA 582 399 695 Antisense
AGAACATAACACCCTTCTTCATGTA 180 71 732 Antisense
ATCGTCGACGGCATCAAGCTGTCAG 419 35 803 Antisense
ATTCAAGTTTCTCTAAATGCTCCAT 499 5 850 Antisense
AATGCTCCATACTATACACTTCAAT 518 165 865 Antisense
TTATATATCTCCTTCAATTTTCCAT 263 679 959 Antisense
TATACGAATCTACTGGTTGCTCCAA 640 659 994 Antisense
GTCGACAACCTAACAAGATGCCTTT 214 475 1031 Antisense
Sequence Source Affymetrix Proprietary Database