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[185440_s_at]

Description ZK973.10 /REP_DB=WormBase Gene ID /WP=CE23478 /TR=Q9N4L8 /GB=AAF40003.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 26      6grp_total > 41      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3396
1 2 3 4 range
A 4963.6
(0.3)
P 		6372.1
(2.9)
P 		6448.5
(3)
P 		3124.9
(-3)
P 		3324
B 5534
(2.1)
P 		5992.2
(3)
P 		5628.7
(2.3)
P 		3052.9
(-3)
P 		2939
C 4942.9
(0.5)
P 		5252.8
(1.2)
P 		6072.4
(3)
P 		3349.2
(-3)
P 		2723
avr 5146.8
(1.1) 		5872.4
(2.6) 		6049.9
(3) 		3175.7
(-3) 		2874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4270
1 2 3 4 5 6 range
A 5615.2
(-0.6)
P 		5579.2
(-0.7)
P 		8178.1
(3)
P 		6157.7
(0.2)
P 		4265.8
(-2.5)
P 		3907.7
(-3)
P 		4270
B 5558.2
(-1.1)
P 		6277.5
(0.2)
P 		7860.2
(3)
P 		5790.9
(-0.7)
P 		5298.9
(-1.5)
P 		4461.3
(-3)
P 		3399
C 4222.3
(-2.8)
P 		6474.2
(1.9)
P 		6717.2
(2.4)
P 		6986.8
(3)
P 		4104.3
(-3)
P 		4486.1
(-2.2)
P 		2883
avr 5131.9
(-1.5) 		6110.3
(0.3) 		7585.2
(3) 		6311.8
(0.7) 		4556.3
(-2.5) 		4285
(-3) 		3300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1659
1 2 3 4 range
A 1807.3
(3)
P 		1383.2
(1.1)
P 		1685.8
(2.5)
P 		457.4
(-3)
P 		1350
B 1764.8
(3)
P 		1479.9
(1.5)
P 		1304.3
(0.5)
P 		650.6
(-3)
P 		1114
C 1636.2
(1.1)
P 		1510.2
(0.7)
P 		2116.4
(3)
P 		564.7
(-3)
P 		1552
avr 1736.1
(3) 		1457.8
(1.6) 		1702.2
(2.8) 		557.6
(-3) 		1179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1202
1 2 3 4 5 6 range
A 1035.1
(-2.5)
P 		1984.2
(3)
P 		1781
(1.8)
P 		1561.7
(0.5)
P 		1287.2
(-1)
P 		951.4
(-3)
P 		1033
B 1934
(0.9)
P 		2089.5
(2.4)
P 		1908.7
(0.6)
P 		1533.8
(-3)
P 		2152.9
(3)
P 		1663.6
(-1.7)
P 		619
C 1565
(-0.8)
P 		1975.5
(3)
P 		1709.6
(0.5)
P 		1405
(-2.3)
P 		1328.1
(-3)
P 		1501.8
(-1.4)
P 		647
avr 1511.4
(-1.7) 		2016.4
(3) 		1799.8
(1) 		1500.2
(-1.8) 		1589.4
(-1) 		1372.3
(-3) 		644
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185440_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.584
Sequence Type Exemplar sequence
Representative Public ID ZK973.10 NCBI
Target Description ZK973.10 /REP_DB=WormBase Gene ID /WP=CE23478 /TR=Q9N4L8 /GB=AAF40003.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058958 NCBI Caenorhabditis elegans LiPid Depleted family member (lpd-5) (lpd-5) mRNA, complete cds. 11/11 None
SNAP00000023512 ENSEMBL cdna:SNAP chromosome:CEL140:I:4372341:4373489:-1 11/11 None
GENEFINDER00000023528 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4372341:4373019:-1 10/11 None
ZK973.10 ENSEMBL cdna:known chromosome:CEL140:I:4372294:4373489:-1 gene:ZK973.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4372340-4373489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lpd-5
Ensembl ZK973.10
Entrez Gene 172037 Entrez gene
SwissProt Q9N4L8 EMBL-EBI
WormBase CE23478 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247011_AT NADH-ubiquinone oxidoreductase-related at
CANINE:1583458_S_AT similar to NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) cfa
CANINE:1591571_AT similar to NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) cfa
CANINE:1585228_AT similar to NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) cfa
CANINE_2:CFA.9529.1.A1_S_AT similar to NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) cfa
CANINE_2:CFAAFFX.15952.1.S1_S_AT similar to NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) cfa
DROSOPHILA_2:1632221_AT dm
DROSGENOME1:145368_AT dm
CHICKEN:GGA.3232.1.S1_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) gga
HG-U133_PLUS_2:209303_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-U133A_2:209303_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-U133A:209303_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-FOCUS:209303_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HU35KSUBA:RC_AA063581_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
U133_X3P:G13528959_3P_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-U95AV2:38695_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-U95B:45508_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-U95B:45509_G_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
U133_X3P:HS2.374685.1.S1_3P_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HG-U133_PLUS_2:1555057_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
HU35KSUBD:RC_C21125_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) hs
MU11KSUBA:AA590675_S_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MG-U74AV2:92876_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MG-U74CV2:137973_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOE430A:1448959_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOUSE430A_2:1448959_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOUSE430_2:1448959_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOE430A:1418117_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOUSE430A_2:1418117_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOUSE430_2:1418117_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOE430A:1438166_X_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOUSE430A_2:1438166_X_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOUSE430_2:1438166_X_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4 mm
MOE430B:1444464_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, mRNA (cDNA clone MGC:5649 IMAGE:3585543) mm
MOUSE430_2:1444464_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, mRNA (cDNA clone MGC:5649 IMAGE:3585543) mm
MOE430B:1459760_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, mRNA (cDNA clone MGC:5649 IMAGE:3585543) mm
MOUSE430_2:1459760_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, mRNA (cDNA clone MGC:5649 IMAGE:3585543) mm
MU19KSUBA:TC14663_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, mRNA (cDNA clone MGC:5649 IMAGE:3585543) mm
RT-U34:RC_AI013297_G_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RG-U34A:RC_AI013297_G_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RT-U34:RC_AI013297_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RG-U34A:RC_AI013297_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RT-U34:RC_AI175973_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RG-U34A:RC_AI175973_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RG-U34C:RC_AI101932_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RAE230A:1372147_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
RAT230_2:1372147_AT NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16651 oxidoreductase activity, acting on NADH or NADPH inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF40003 Lipid depleted protein 5 [Caenorhabditis elegans] ref|NP_491359.1| LiPid Depleted family member (lpd-5) [Caenorhabditis elegans] 1.0E-115
blast AAF40003 Lipid depleted protein 5 [Caenorhabditis elegans] ref|NP_491359.1| LiPid Depleted family member (lpd-5) [Caenorhabditis elegans] 1.0E-101
blast CAE56281 Hypothetical protein CBG23930 [Caenorhabditis briggsae] 3.0E-93
blast CAE56281 Hypothetical protein CBG23930 [Caenorhabditis briggsae] 4.0E-93
blast AAU05732 GekBS037P [Gekko japonicus] 8.0E-36
blast AAU05732 GekBS037P [Gekko japonicus] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR006885 EMBL-EBI ETC complex I subunit conserved region 3.6E-67
Pfam IPR006885 EMBL-EBI ETC complex I subunit conserved region 3.6E-67
Sequence
Target Sequence 
>C. ELEGANS:185440_S_AT
gaatgatgcttcgtgctggagcctctcgttgcctttcggcgggaaacacggctttccgtt
gcctctcgactggaaaggacaacctaccggtcacaagatcgcatgatgccaaaaaggttg
agctcaacgatattcttgacaaaccgtctcaaaaaactccagtaaaagtatcatccgatg
agacaatggatatcggaggtgttccacttgatcaccaagatgcccgtaccgctcgcatct
tccgtccagcaagagagactacacaaagtgcttggggtaataccaagtcctggaccattg
agctggataatcgtcaaagatgggaaaatccattgatgggatggtctggaactgcggatc
cactctccaatgttggaatggatctcaagtttgccacaaaagaggacgctatcgctttct
gtgaaaagaatcgctgggagtttgacgtcgaggagccacatgagcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGATGCTTCGTGCTGGAGCCTC 503 331 77 Antisense
TCCGTTGCCTCTCGACTGGAAAGGA 169 595 131 Antisense
CAACCTACCGGTCACAAGATCGCAT 384 185 156 Antisense
TATCGGAGGTGTTCCACTTGATCAC 176 659 267 Antisense
ACTTGATCACCAAGATGCCCGTACC 344 103 282 Antisense
GCATCTTCCGTCCAGCAAGAGAGAC 403 309 311 Antisense
CCAAGTCCTGGACCATTGAGCTGGA 379 277 359 Antisense
CGGATCCACTCTCCAATGTTGGAAT 329 243 431 Antisense
AAAGAGGACGCTATCGCTTTCTGTG 503 121 475 Antisense
GAATCGCTGGGAGTTTGACGTCGAG 684 329 504 Antisense
TGACGTCGAGGAGCCACATGAGCGC 540 569 519 Antisense
Sequence Source Affymetrix Proprietary Database