[Home] | [Total List]

[185437_at]

Description C16A11.7 /REP_DB=WormBase Gene ID /WP=CE19357 /TR=O76585 /GB=AAK31408.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 98      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 54.1
(-3)
M 		139.3
(3)
P 		77.6
(-1.3)
A 		137.6
(2.9)
P 		85
B 57.7
(-3)
P 		110
(3)
P 		71
(-1.5)
P 		64.7
(-2.2)
P 		52
C 108.3
(0.3)
P 		137.7
(3)
P 		71.4
(-3)
P 		124.6
(1.8)
P 		66
avr 73.4
(-3) 		129
(3) 		73.3
(-3) 		109
(0.8) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 32.6
(-3)
A 		39.2
(-2.8)
P 		45
(-2.6)
A 		82.1
(-1.6)
P 		110.1
(-0.7)
P 		238.3
(3)
P 		206
B 60.9
(-2.2)
A 		42.3
(-3)
A 		78
(-1.4)
P 		63.5
(-2.1)
A 		177.2
(3)
P 		145.2
(1.6)
P 		135
C 49.6
(-2.3)
M 		65.1
(-1.7)
P 		34.4
(-3)
A 		41.2
(-2.7)
A 		170.8
(2.9)
P 		173.3
(3)
P 		139
avr 47.7
(-3) 		48.9
(-2.9) 		52.5
(-2.8) 		62.3
(-2.4) 		152.7
(1.6) 		185.6
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.7
(-3)
M 		30.2
(3)
P 		20.3
(-2.7)
A 		20.1
(-2.8)
P 		11
B 18.4
(-0.9)
P 		27.2
(3)
P 		16.5
(-1.8)
P 		13.8
(-3)
P 		13
C 35.8
(1.8)
P 		39.6
(3)
P 		24.9
(-1.7)
P 		21
(-3)
P 		19
avr 24.6
(-0.3) 		32.3
(3) 		20.6
(-2) 		18.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 6
(-3)
A 		14
(-2.1)
P 		9.8
(-2.6)
A 		20.8
(-1.3)
P 		33.2
(0.1)
P 		58
(3)
P 		52
B 21.2
(-2.3)
A 		14.1
(-3)
A 		18.9
(-2.5)
P 		16.8
(-2.7)
A 		72
(3)
P 		54.2
(1.2)
P 		58
C 18.4
(-1.8)
M 		19.9
(-1.6)
P 		8.8
(-2.9)
A 		8.3
(-3)
A 		55.3
(2.7)
P 		58
(3)
P 		50
avr 15.2
(-2.6) 		16
(-2.5) 		12.5
(-3) 		15.3
(-2.6) 		53.5
(2.6) 		56.7
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5075
Sequence Type Exemplar sequence
Representative Public ID C16A11.7 NCBI
Target Description C16A11.7 /REP_DB=WormBase Gene ID /WP=CE19357 /TR=O76585 /GB=AAK31408.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062348 NCBI Caenorhabditis elegans C16A11.7 (C16A11.7) mRNA, complete cds. 11/11 None
SNAP00000042945 ENSEMBL cdna:SNAP chromosome:CEL140:II:4255914:4256933:-1 11/11 None
GENEFINDER00000042952 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4256099:4256933:-1 10/11 None
C16A11.7 ENSEMBL cdna:known chromosome:CEL140:II:4255914:4256933:-1 gene:C16A11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4255920-4256932(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A11.7
Entrez Gene 182651 Entrez gene
SwissProt O76585 EMBL-EBI
WormBase CE34690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31408 Hypothetical protein C16A11.7 [Caenorhabditis elegans] ref|NP_494749.2| C16A11.7 [Caenorhabditis elegans] 1.0E-113
blast AAK31408 Hypothetical protein C16A11.7 [Caenorhabditis elegans] ref|NP_494749.2| C16A11.7 [Caenorhabditis elegans] 2.0E-87
blast CAB03040 Hypothetical protein F32B6.4 [Caenorhabditis elegans] ref|NP_501779.1| F32B6.4 [Caenorhabditis elegans] 7.0E-75
blast CAE74257 Hypothetical protein CBG21946 [Caenorhabditis briggsae] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:185437_AT
acttctaatagcaacaccagcgcccgtcacgcattcagcccatgctcgtattcgtcaagt
ggcactgaaattcggaaagtagcaatctctgtctcatcgaattcaacaaccgagcttccg
tgtgctcaatcgccgaacgttggatcacgtaccagtgacagtcatcagctcactcttgga
tcggatcttcgttcagaacccaataatttgaatatcgctgcgacgttagctgagccaaat
atcgcggagcatttcaaaggtgtgctcaccaagaaggaagcggcaaatttgacacgtcgg
gatgactttacgatgtactatcgtgtcgtaaaggatcaggccaaagtggaattggagact
acgattcctttattcatttgctatagaaactcggagaataaagtgttcagctttcgcgtg
gagcaagtgctcactgagaataacagtatgtgtttcgtcgcctattggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTAATAGCAACACCAGCGCCC 601 103 91 Antisense
GCCCATGCTCGTATTCGTCAAGTGG 148 287 128 Antisense
AGTAGCAATCTCTGTCTCATCGAAT 323 63 168 Antisense
TCAACAACCGAGCTTCCGTGTGCTC 696 627 193 Antisense
GTGCTCAATCGCCGAACGTTGGATC 206 479 212 Antisense
TCATCAGCTCACTCTTGGATCGGAT 103 621 252 Antisense
TGGATCGGATCTTCGTTCAGAACCC 248 551 267 Antisense
TATCGCTGCGACGTTAGCTGAGCCA 684 657 303 Antisense
GACTACGATTCCTTTATTCATTTGC 451 373 447 Antisense
AAGTGTTCAGCTTTCGCGTGGAGCA 432 159 491 Antisense
GTATGTGTTTCGTCGCCTATTGGAC 219 455 536 Antisense
Sequence Source Affymetrix Proprietary Database