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[185435_at]

Description H41C03.2 /REP_DB=WormBase Gene ID /WP=CE19508 /TR=O76635 /GB=AAC26305.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 90.6
(-1.3)
P 		57
(-3)
A 		72.9
(-2.2)
A 		172.4
(3)
P 		115
B 132
(0.3)
P 		91.7
(-1.8)
A 		67.7
(-3)
A 		183
(3)
P 		115
C 128.3
(0.2)
P 		77.6
(-2)
A 		55.3
(-3)
A 		192.3
(3)
P 		137
avr 117
(-0.4) 		75.4
(-2.5) 		65.3
(-3) 		182.6
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 99.8
(1)
P 		69.3
(-3)
A 		87.9
(-0.6)
A 		115.6
(3)
P 		90.6
(-0.2)
A 		75.3
(-2.2)
A 		46
B 120.2
(1.7)
P 		98.9
(0.2)
P 		72.7
(-1.7)
A 		138.1
(3)
P 		91.9
(-0.3)
M 		54.9
(-3)
P 		83
C 110.2
(3)
P 		91.8
(1.2)
P 		67.4
(-1.1)
A 		72.1
(-0.6)
A 		47.4
(-3)
A 		86.6
(0.7)
A 		63
avr 110.1
(3) 		86.7
(-0.7) 		76
(-2.4) 		108.6
(2.8) 		76.6
(-2.3) 		72.3
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 33
(3)
P 		12.4
(-3)
A 		19.1
(-1)
A 		25.2
(0.7)
P 		21
B 42.1
(3)
P 		22.7
(-1.4)
A 		15.7
(-3)
A 		39
(2.3)
P 		26
C 42.5
(3)
P 		22.3
(-2.2)
A 		19.3
(-3)
A 		32.4
(0.4)
P 		23
avr 39.2
(3) 		19.1
(-2.7) 		18
(-3) 		32.2
(1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 18.4
(-2.9)
P 		24.6
(0.4)
A 		19.2
(-2.5)
A 		29.3
(3)
P 		27.3
(1.9)
A 		18.3
(-3)
A 		11
B 41.8
(3)
P 		32.9
(0.8)
P 		17.6
(-3)
A 		36.6
(1.7)
P 		37.4
(1.9)
M 		20.5
(-2.3)
P 		24
C 40.9
(3)
P 		28
(0.1)
P 		17.2
(-2.4)
A 		14.5
(-3)
A 		15.3
(-2.8)
A 		29
(0.3)
A 		26
avr 33.7
(3) 		28.5
(1) 		18
(-3) 		26.8
(0.4) 		26.7
(0.3) 		22.6
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5181
Sequence Type Exemplar sequence
Representative Public ID H41C03.2 NCBI
Target Description H41C03.2 /REP_DB=WormBase Gene ID /WP=CE19508 /TR=O76635 /GB=AAC26305.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062766 NCBI Caenorhabditis elegans H41C03.2 (H41C03.2) mRNA, complete cds. 11/11 None
SNAP00000017245 ENSEMBL cdna:SNAP chromosome:CEL140:II:5850328:5852004:-1 11/11 None
GENEFINDER00000017248 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5850328:5852004:-1 11/11 None
H41C03.2 ENSEMBL cdna:known chromosome:CEL140:II:5850328:5851638:-1 gene:H41C03.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5850324-5851654(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H41C03.2
Entrez Gene 186812 Entrez gene
SwissProt O76635 EMBL-EBI
WormBase CE35983 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26305 Hypothetical protein H41C03.2 [Caenorhabditis elegans] ref|NP_495167.2| H41C03.2 [Caenorhabditis elegans] 1.0E-174
blast AAC26305 Hypothetical protein H41C03.2 [Caenorhabditis elegans] ref|NP_495167.2| H41C03.2 [Caenorhabditis elegans] 1.0E-155
blast CAE59209 Hypothetical protein CBG02522 [Caenorhabditis briggsae] 1.0E-149
blast CAE59209 Hypothetical protein CBG02522 [Caenorhabditis briggsae] 1.0E-138
blast AAA85752 Hypothetical protein C14E2.6 [Caenorhabditis elegans] ref|NP_508336.1| C14E2.6 [Caenorhabditis elegans] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.0E-42
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.0E-42
Sequence
Target Sequence 
>C. ELEGANS:185435_AT
gggtttccgatctacaaacgatccgttccaatttgttgctcaattctacgtgttcacaat
gggatggatgaaagattttccactgggtgggagaatggttgcaatttacgttgaaatgta
taaagatattctggaatttggatttgatgcttcattagagaaagtagtacaagagtatcc
atcgtattcaatgttaatcactgggcattctcttggtggagctatggctactatattctc
acttcatgttgctctcaaatatccacagaagaagactagtttatattcaatgtctgcacc
acgaagcggagatgaaacatttgtgaaacttctgagagaacatgttttcgaggagtttcg
cgttgttcgagacggcgattttgtgcccgacgcgccgttccgtgtgtcacaaacaatcga
gacagctcatcataatagttttgaaatattttatggaagtcacatggctgtggataacta
taaaatatgtaatcagcctgaaacagaatattgtttgaaaggatcttggtggaagaaacc
ggtggcacacatgtatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTTCCGATCTACAAACGATCCG 388 497 318 Antisense
ACGATCCGTTCCAATTTGTTGCTCA 391 93 335 Antisense
TTGTTGCTCAATTCTACGTGTTCAC 333 707 350 Antisense
CACTGGGCATTCTCTTGGTGGAGCT 634 197 516 Antisense
GCTATGGCTACTATATTCTCACTTC 681 303 538 Antisense
TTCTCACTTCATGTTGCTCTCAAAT 696 691 553 Antisense
TCAATGTCTGCACCACGAAGCGGAG 582 631 604 Antisense
GGAGTTTCGCGTTGTTCGAGACGGC 259 517 669 Antisense
TCGAGACGGCGATTTTGTGCCCGAC 92 603 684 Antisense
CGCCGTTCCGTGTGTCACAAACAAT 55 255 710 Antisense
GAAACCGGTGGCACACATGTATTTG 260 359 852 Antisense
Sequence Source Affymetrix Proprietary Database