[Home] | [Total List]

[185434_at]

Description C08E3.10 /REP_DB=WormBase Gene ID /WP=CE08013 /TR=O17201 /GB=AAB70969.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      6grp_total > 80      4grp_total > 01      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 32.9
(-0.5)
A 		4.7
(-3)
A 		23.1
(-1.4)
A 		73.5
(3)
P 		69
B 26.6
(-3)
P 		49.2
(3)
A 		29.3
(-2.3)
A 		36
(-0.5)
A 		23
C 23.3
(-1.5)
A 		3.5
(-3)
A 		32
(-0.8)
A 		80.9
(3)
P 		77
avr 27.6
(-1.9) 		19.1
(-3) 		28.1
(-1.8) 		63.5
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 62.4
(-2.2)
P 		40.4
(-3)
P 		112.6
(-0.3)
P 		199.2
(3)
P 		105.8
(-0.5)
P 		59.3
(-2.3)
P 		159
B 52.3
(-3)
P 		60.3
(-2.4)
P 		101.1
(0.4)
P 		139.2
(3)
P 		122.9
(1.9)
P 		81.2
(-1)
P 		87
C 75.2
(-1.8)
P 		65.3
(-2.1)
P 		42.3
(-3)
A 		201.5
(3)
P 		113
(-0.3)
P 		92.9
(-1.1)
P 		159
avr 63.3
(-2.6) 		55.3
(-3) 		85.3
(-1.6) 		180
(3) 		113.9
(-0.2) 		77.8
(-1.9) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12
(3)
A 		1
(-3)
A 		6.1
(-0.2)
A 		10.8
(2.3)
P 		11
B 8.5
(-1.1)
P 		12.2
(3)
A 		6.8
(-3)
A 		7.7
(-2)
A 		5
C 7.7
(0.2)
A 		1
(-3)
A 		11.2
(1.9)
A 		13.6
(3)
P 		13
avr 9.4
(1.7) 		4.7
(-3) 		8
(0.3) 		10.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.5
(-3)
P 		14.4
(-2.6)
P 		24.5
(-1)
P 		50.5
(3)
P 		31.9
(0.1)
P 		14.4
(-2.6)
P 		39
B 18.2
(-3)
P 		20.1
(-2.6)
P 		24.5
(-1.8)
P 		36.9
(0.5)
P 		49.9
(3)
P 		30.3
(-0.7)
P 		32
C 27.9
(0.5)
P 		19.9
(-1.2)
P 		10.8
(-3)
A 		40.5
(3)
P 		36.6
(2.2)
P 		31.1
(1.1)
P 		30
avr 19.2
(-2.7) 		18.1
(-3) 		19.9
(-2.6) 		42.6
(3) 		39.5
(2.2) 		25.3
(-1.2) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5814
Sequence Type Exemplar sequence
Representative Public ID C08E3.10 NCBI
Target Description C08E3.10 /REP_DB=WormBase Gene ID /WP=CE08013 /TR=O17201 /GB=AAB70969.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061614 NCBI Caenorhabditis elegans C08E3.10 (C08E3.10) mRNA, complete cds. 11/11 None
SNAP00000042052 ENSEMBL cdna:SNAP chromosome:CEL140:II:1619898:1621265:-1 11/11 None
GENEFINDER00000042069 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1619898:1621265:-1 11/11 None
C08E3.10 ENSEMBL cdna:known chromosome:CEL140:II:1619898:1621265:-1 gene:C08E3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1619896-1621264(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.10
Entrez Gene 182402 Entrez gene
SwissProt O17201 EMBL-EBI
WormBase CE34666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 0.0
blast AAB70968 Hypothetical protein C08E3.9 [Caenorhabditis elegans] 1.0E-105
blast NP_494014 C08E3.9 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-53
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-53
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-10
Sequence
Target Sequence 
>C. ELEGANS:185434_AT
tgaacggcattgtggaagccctcaaatctgcgaaaagcttaacgtcaagaactgtgagaa
tatggcctttttcgttttcagaacttgcacaactagtggctttctttccagctgaaacac
tggaagaaatatattttgctggagagaaagataccggatttgagcagctggtcagcttgg
atcaatggaaaaatgctagaaaatttgacgcagatgggaagctgagtgttccaatagagc
actttttgcatttcgagtggtttgaagtttgcctggcaacattcacagaaagtgatgcga
tgaaaattcgtgatatgatcgatagatccactcactttggtcatgctgagattcgctcta
aggatatgaacatcagcgaactgatgagagtcttcgctgcgcacaatcagaaccaaaact
tcgcatacgaaactccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGGCATTGTGGAAGCCCTCAA 13 575 704 Antisense
GGAAGCCCTCAAATCTGCGAAAAGC 178 531 717 Antisense
GAATATGGCCTTTTTCGTTTTCAGA 532 323 761 Antisense
CAACTAGTGGCTTTCTTTCCAGCTG 344 189 793 Antisense
GATACCGGATTTGAGCAGCTGGTCA 341 425 853 Antisense
AGCTGGTCAGCTTGGATCAATGGAA 78 81 869 Antisense
GTGTTCCAATAGAGCACTTTTTGCA 117 485 929 Antisense
CGAGTGGTTTGAAGTTTGCCTGGCA 439 249 957 Antisense
GAACTGATGAGAGTCTTCGCTGCGC 21 349 1081 Antisense
TCTTCGCTGCGCACAATCAGAACCA 32 617 1094 Antisense
AAACTTCGCATACGAAACTCCGGAT 26 129 1119 Antisense
Sequence Source Affymetrix Proprietary Database