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[185433_at]

Description Y87G2A.13 /REP_DB=WormBase Gene ID /WP=CE24683 /TR=Q9U1P9 /GB=CAB60433.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 35      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_total > 09      4grp_total > 06      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 103.1
(-2.5)
P 		100.5
(-3)
P 		123.9
(1.6)
P 		131.2
(3)
P 		31
B 92.1
(1.5)
P 		67.2
(-3)
P 		73.8
(-1.8)
P 		100.3
(3)
P 		33
C 113.6
(1.4)
P 		82.1
(-1.5)
P 		66.4
(-3)
P 		130.6
(3)
P 		64
avr 102.9
(0.1) 		83.3
(-3) 		88
(-2.2) 		120.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 98.9
(1.4)
P 		48.5
(-3)
A 		70.5
(-1.1)
P 		116.6
(3)
P 		60.5
(-1.9)
P 		87.1
(0.4)
P 		68
B 100.3
(1.8)
P 		107.2
(3)
P 		71.5
(-3)
P 		104
(2.5)
P 		91.1
(0.3)
P 		86.3
(-0.5)
P 		36
C 108.8
(2.9)
P 		105.4
(2.5)
P 		109.8
(3)
P 		96
(1.3)
P 		61.8
(-3)
P 		85.3
(-0.1)
P 		48
avr 102.7
(2.5) 		87
(-0.2) 		83.9
(-0.8) 		105.5
(3) 		71.1
(-3) 		86.2
(-0.4) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 37.5
(3)
P 		21.8
(-2.1)
P 		32.4
(1.3)
P 		19.2
(-3)
P 		18
B 29.4
(3)
P 		16.6
(-3)
P 		17.1
(-2.8)
P 		21.4
(-0.8)
P 		13
C 37.6
(3)
P 		23.6
(-2.4)
P 		23.2
(-2.5)
P 		22
(-3)
P 		16
avr 34.8
(3) 		20.7
(-3) 		24.2
(-1.5) 		20.9
(-2.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 18.2
(-1.8)
P 		17.3
(-2.2)
A 		15.3
(-3)
P 		29.6
(3)
P 		18.3
(-1.7)
P 		21.2
(-0.5)
P 		14
B 34.9
(2.4)
P 		35.7
(2.6)
P 		17.4
(-3)
P 		27.6
(0.1)
P 		37
(3)
P 		32.2
(1.5)
P 		20
C 40.3
(3)
P 		32.2
(0.7)
P 		28
(-0.5)
P 		19.3
(-3)
P 		20
(-2.8)
P 		28.6
(-0.3)
P 		21
avr 31.1
(3) 		28.4
(1.5) 		20.2
(-3) 		25.5
(-0.1) 		25.1
(-0.3) 		27.3
(0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1050
Sequence Type Exemplar sequence
Representative Public ID Y87G2A.13 NCBI
Target Description Y87G2A.13 /REP_DB=WormBase Gene ID /WP=CE24683 /TR=Q9U1P9 /GB=CAB60433.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060984 NCBI Caenorhabditis elegans Y87G2A.13 (Y87G2A.13) mRNA, complete cds. 11/11 None
SNAP00000019594 ENSEMBL cdna:SNAP chromosome:CEL140:I:13597540:13612092:-1 11/11 None
GENEFINDER00000019602 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13609843:13612092:-1 11/11 None
Y87G2A.13.1 ENSEMBL cdna:known chromosome:CEL140:I:13606737:13611514:-1 gene:Y87G2A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13609773-13611443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y87G2A.13
Entrez Gene 173230 Entrez gene
SwissProt Q9U1P9 EMBL-EBI
WormBase CE37591 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588311_AT similar to CG7638-PA cfa
CANINE_2:CFAAFFX.13247.1.S1_S_AT similar to CG7638-PA cfa
DROSOPHILA_2:1635329_AT dm
DROSGENOME1:148556_AT dm
CHICKEN:GGAAFFX.20572.1.S1_S_AT similar to hypothetical protein MGC33214 gga
CHICKEN:GGAAFFX.6890.1.S1_AT similar to hypothetical protein MGC33214 gga
HG-U133_PLUS_2:227861_AT hypothetical protein MGC33214 hs
HG-U133B:227861_AT hypothetical protein MGC33214 hs
U133_X3P:HS.255667.0.A1_3P_X_AT hypothetical protein MGC33214 hs
U133_X3P:HS.255667.0.A1_3P_AT hypothetical protein MGC33214 hs
U133_X3P:HS.193420.0.A1_3P_AT hypothetical protein MGC33214 hs
U133_X3P:HS.151725.0.A1_3P_AT hypothetical protein MGC33214 hs
U133_X3P:HS.136525.0.A1_3P_AT hypothetical protein MGC33214 hs
HG-U133_PLUS_2:236227_AT hypothetical protein MGC33214 hs
HG-U133B:236227_AT hypothetical protein MGC33214 hs
HG-U133_PLUS_2:238783_AT hypothetical protein MGC33214 hs
HG-U133B:238783_AT hypothetical protein MGC33214 hs
HG-U133_PLUS_2:244513_AT hypothetical protein MGC33214 hs
HG-U133B:244513_AT hypothetical protein MGC33214 hs
HG-U95E:68870_AT hypothetical protein MGC33214 hs
HG-U95E:75125_AT hypothetical protein MGC33214 hs
HG-U95D:79118_AT hypothetical protein MGC33214 hs
HG-U95E:80629_AT hypothetical protein MGC33214 hs
HG-U95E:80630_G_AT hypothetical protein MGC33214 hs
HG-U95D:79120_AT Hypothetical protein MGC33214 hs
MG-U74BV2:162831_AT RIKEN cDNA 2810446P07 gene mm
MOE430B:1428175_AT RIKEN cDNA 2810446P07 gene mm
MOUSE430_2:1428175_AT RIKEN cDNA 2810446P07 gene mm
MG-U74CV2:138404_AT RIKEN cDNA 2810446P07 gene, mRNA (cDNA clone MGC:60793 IMAGE:30020101) mm
MOE430B:1441155_AT RIKEN cDNA 2810446P07 gene, mRNA (cDNA clone MGC:60793 IMAGE:30020101) mm
MOUSE430_2:1441155_AT RIKEN cDNA 2810446P07 gene, mRNA (cDNA clone MGC:60793 IMAGE:30020101) mm
RG-U34C:RC_AA818020_AT similar to hypothetical protein MGC33214 (predicted) rn
RG-U34C:RC_AI072473_AT similar to hypothetical protein MGC33214 (predicted) rn
RAE230A:1374605_AT similar to hypothetical protein MGC33214 (predicted) rn
RAT230_2:1374605_AT similar to hypothetical protein MGC33214 (predicted) rn
RAE230B:1384263_AT similar to hypothetical protein MGC33214 (predicted) rn
RAT230_2:1384263_AT similar to hypothetical protein MGC33214 (predicted) rn
RAE230A:1375513_AT Similar to hypothetical protein MGC33214 (predicted) rn
RAT230_2:1375513_AT Similar to hypothetical protein MGC33214 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60433 Hypothetical protein Y87G2A.13 [Caenorhabditis elegans] ref|NP_493385.2| Y87G2A.13 [Caenorhabditis elegans] 0.0
blast CAB60432 Hypothetical protein Y87G2A.11 [Caenorhabditis elegans] ref|NP_493383.1| Y87G2A.11 [Caenorhabditis elegans] 0.0
blast T27475 hypothetical protein Y87G2A.w - Caenorhabditis elegans 1.0E-165
blast CAE72591 Hypothetical protein CBG19780 [Caenorhabditis briggsae] 1.0E-155
blast CAE72592 Hypothetical protein CBG19781 [Caenorhabditis briggsae] 1.0E-155
blast CAB60433 Hypothetical protein Y87G2A.13 [Caenorhabditis elegans] ref|NP_493385.2| Y87G2A.13 [Caenorhabditis elegans] 1.0E-151
blast T27475 hypothetical protein Y87G2A.w - Caenorhabditis elegans 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.88
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0032
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493385.2 7 4-22,106-128,138-160,167-185,232-254,369-391,432-454
Y87G2A.13.1 7 4-22,106-128,138-160,167-185,232-254,369-391,432-454
SNAP00000019594 6 75-97,107-129,136-154,201-223,338-360,401-423
GENEFINDER00000019602 5 5-27,97-119,129-151,158-176,223-245
Sequence
Target Sequence 
>C. ELEGANS:185433_AT
tcacttcattggctctgcctgtgtattcctgtatgcctattcgtctacacactatcagaa
gtctacaactacataatgcctgacaatcgtgacttcaacgtgtcaattgtgttcatgctt
gttgtcattatgtttgtacttcaagtacttactgcactctcttcgtatttggtttcaagt
gtcgatgaacgaggattcatgatttccattggatgtctatatttcttgttttcgttcatt
tttgcaatgaattcacatcgcatttttgatattcaaatgctcgaagcctacgacaaattg
agtacaaatattgcggatttcgtggaaagctctggactcttcgataactccactgcaaat
attcgtgactatcggccaacgaatccattgatgatgtacatctccctatcagtattcttc
tcaatgctctccgcgatgctagttttcccaaatttccgatgtgcaattatgtatctgaag
gcgttggaaaatgatggaagaattaaaaaatcgctggatcacgtcgcttttttgttgccc
gcattcattttggcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTCATTGGCTCTGCCTGTGTA 41 629 319 Antisense
TGCCTGTGTATTCCTGTATGCCTAT 219 585 334 Antisense
GCCTATTCGTCTACACACTATCAGA 652 281 353 Antisense
TGCACTCTCTTCGTATTTGGTTTCA 7 579 471 Antisense
AAAGCTCTGGACTCTTCGATAACTC 223 123 644 Antisense
GTGACTATCGGCCAACGAATCCATT 207 479 683 Antisense
GATGTACATCTCCCTATCAGTATTC 587 409 711 Antisense
TATCAGTATTCTTCTCAATGCTCTC 92 661 725 Antisense
AGTTTTCCCAAATTTCCGATGTGCA 165 61 759 Antisense
TGGATCACGTCGCTTTTTTGTTGCC 365 551 833 Antisense
GTTGCCCGCATTCATTTTGGCATCA 684 439 852 Antisense
Sequence Source Affymetrix Proprietary Database