[Home] | [Total List]

[185431_at]

Description B0511.11 /REP_DB=WormBase Gene ID /WP=CE26852 /TR=O61823 /GB=AAC17656.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 9.3
(-1.4)
A 		7.3
(-2.4)
A 		6.2
(-3)
A 		17.8
(3)
A 		12
B 26.6
(3)
A 		3.5
(-3)
A 		3.7
(-2.9)
A 		7
(-2.1)
A 		23
C 7.2
(-2.5)
A 		12.4
(3)
A 		6.7
(-3)
A 		12.3
(2.9)
A 		6
avr 14.4
(3) 		7.7
(-1.5) 		5.5
(-3) 		12.4
(1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.5
(-3)
A 		4
(-2.7)
A 		13.8
(3)
A 		8.3
(-0.2)
A 		7.4
(-0.7)
A 		6.9
(-1)
A 		10
B 17.5
(-1.2)
A 		7.9
(-3)
A 		39.4
(3)
A 		27
(0.6)
A 		8.8
(-2.8)
A 		29.6
(1.1)
A 		32
C 12.9
(-1.3)
A 		40.2
(3)
A 		1.9
(-3)
A 		6
(-2.4)
A 		2.7
(-2.9)
A 		7.3
(-2.2)
A 		38
avr 11.3
(-0.5) 		17.4
(2.5) 		18.4
(3) 		13.8
(0.7) 		6.3
(-3) 		14.6
(1.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.4
(3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		2.6
(0.3)
A 		2
B 8.5
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		1.5
(-2.5)
A 		8
C 2.4
(-1.8)
A 		3.6
(3)
A 		2.3
(-2.2)
A 		2.1
(-3)
A 		2
avr 4.8
(3) 		2
(-2.3) 		1.6
(-3) 		2.1
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.4
(-1.2)
A 		3
(3)
A 		2.1
(0.7)
A 		2.2
(0.9)
A 		1.7
(-0.4)
A 		2
B 6.1
(-0.5)
A 		2.6
(-3)
A 		9.6
(2)
A 		7.1
(0.2)
A 		3.6
(-2.3)
A 		11
(3)
A 		8
C 4.8
(-0.8)
A 		12.3
(3)
A 		0.5
(-3)
A 		1.2
(-2.6)
A 		0.9
(-2.8)
A 		2.4
(-2)
A 		12
avr 3.9
(0.2) 		5.4
(3) 		4.4
(1.1) 		3.5
(-0.6) 		2.2
(-3) 		5
(2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1382
Sequence Type Exemplar sequence
Representative Public ID B0511.11 NCBI
Target Description B0511.11 /REP_DB=WormBase Gene ID /WP=CE26852 /TR=O61823 /GB=AAC17656.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060387
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000031163 ENSEMBL cdna:SNAP chromosome:CEL140:I:10656234:10658864:-1 11/11 None
GENEFINDER00000031169 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10656234:10658945:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060387 1/11 Cross Hyb Matching Probes None
B0511.11 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10656164-10658226(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17656 Hypothetical protein B0511.11 [Caenorhabditis elegans] ref|NP_492788.1| B0511.11 [Caenorhabditis elegans] 1.0E-159
blast CAE67319 Hypothetical protein CBG12780 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:185431_AT
gtcaccccaatatcttccaaaaacatggactgcaaaattcaatgaatggaaatctgaagc
cgaaaagcaaaagaatggaatcaactggttccgtgttttcttctcgtatccaaagcacaa
atcatttgaagatggaccagaagacacttttggaaatttccgccgtagaaatcgtggtat
tctgatgggacttattctgggacccggagatgtaaaatcatttgaagagacaaaaagaga
ggatgattgtcagaatgctccgaagaatctatcagtgaaattcgtccaatttcccccaaa
tccggcaccaagccaaattgcaagatcctactcacgtcgcaagagcgtcaccgatttgga
gaccgcgaaaaattgtgtgagctctgaaattgagagcattgccgataaggtgaggcagct
gtcactgatcaatgattcgatggcaagggggaccgagcagattgcaaaggtcaatgtgat
gcaggaaggtataaggcaggcacgtcggcaagacatcacaactccaggattcacgaacag
tggaccatcacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACCCCAATATCTTCCAAAAACA 358 463 756 Antisense
GATGATTGTCAGAATGCTCCGAAGA 629 409 997 Antisense
AATCCGGCACCAAGCCAAATTGCAA 307 167 1054 Antisense
AAATTGCAAGATCCTACTCACGTCG 576 115 1070 Antisense
TACTCACGTCGCAAGAGCGTCACCG 213 645 1084 Antisense
GCGTCACCGATTTGGAGACCGCGAA 666 289 1100 Antisense
GACCGCGAAAAATTGTGTGAGCTCT 115 383 1116 Antisense
CAAGGGGGACCGAGCAGATTGCAAA 609 159 1199 Antisense
CAGGCACGTCGGCAAGACATCACAA 432 207 1252 Antisense
GACATCACAACTCCAGGATTCACGA 6 371 1267 Antisense
TTCACGAACAGTGGACCATCACCTC 529 683 1285 Antisense
Sequence Source Affymetrix Proprietary Database