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[185430_at]

Description F23H11.1 /REP_DB=WormBase Gene ID /WP=CE09609 /TR=O01918 /GB=AAC71131.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 96      6grp_total > 76      4grp_total > 13      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 798
(-1.3)
P 		787.7
(-1.5)
P 		690.8
(-3)
P 		1066.7
(3)
P 		376
B 796.1
(2.6)
P 		665.3
(-3)
P 		694.8
(-1.7)
P 		804.4
(3)
P 		139
C 799.9
(-0)
P 		666.6
(-2.2)
P 		614.4
(-3)
P 		986
(3)
P 		372
avr 798
(-0.2) 		706.5
(-2.2) 		666.7
(-3) 		952.4
(3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 707.8
(-2.6)
P 		682.5
(-3)
P 		785.9
(-1.2)
P 		882.7
(0.5)
P 		771.1
(-1.5)
P 		1026.6
(3)
P 		344
B 734.1
(-1.9)
P 		645.1
(-3)
P 		821.9
(-0.9)
P 		745.6
(-1.8)
P 		942.4
(0.5)
P 		1152.5
(3)
P 		507
C 651.3
(-3)
P 		674.9
(-2.8)
P 		688.8
(-2.6)
P 		911.5
(-0.5)
P 		788.7
(-1.7)
P 		1282.3
(3)
P 		631
avr 697.7
(-2.6) 		667.5
(-3) 		765.5
(-1.8) 		846.6
(-0.8) 		834.1
(-0.9) 		1153.8
(3) 		486
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 290.6
(3)
P 		171
(-2.3)
P 		180.6
(-1.9)
P 		156.1
(-3)
P 		135
B 253.9
(3)
P 		164.3
(-2.8)
P 		161
(-3)
P 		171.4
(-2.3)
P 		93
C 264.8
(3)
P 		191.6
(-1.5)
P 		214.1
(-0.1)
P 		166.3
(-3)
P 		99
avr 269.8
(3) 		175.6
(-2.4) 		185.2
(-1.8) 		164.6
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 130.5
(-3)
P 		242.7
(2.6)
P 		171.2
(-1)
P 		223.9
(1.7)
P 		232.7
(2.1)
P 		250
(3)
P 		120
B 255.4
(-1.5)
P 		214.7
(-2.6)
P 		199.6
(-2.9)
P 		197.5
(-3)
P 		382.9
(1.8)
P 		429.7
(3)
P 		232
C 241.4
(-1.4)
P 		205.9
(-2.3)
P 		175.3
(-3)
P 		183.3
(-2.8)
P 		255.2
(-1.1)
P 		429.3
(3)
P 		254
avr 209.1
(-2.1) 		221.1
(-1.8) 		182
(-3) 		201.6
(-2.4) 		290.3
(0.5) 		369.7
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8104
Sequence Type Exemplar sequence
Representative Public ID F23H11.1 NCBI
Target Description F23H11.1 /REP_DB=WormBase Gene ID /WP=CE09609 /TR=O01918 /GB=AAC71131.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064891 NCBI Caenorhabditis elegans BMP receptor Associated protein family member (bra-2) (bra-2) mRNA, complete cds. 11/11 None
SNAP00000010297 ENSEMBL cdna:SNAP chromosome:CEL140:III:911265:912006:1 11/11 None
GENEFINDER00000010309 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:911265:912006:1 11/11 None
F23H11.1 ENSEMBL cdna:known chromosome:CEL140:III:911265:912224:1 gene:F23H11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:911264-912006(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bra-2
Ensembl F23H11.1
Entrez Gene 175255 Entrez gene
SwissProt O01918 EMBL-EBI
WormBase CE09609 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71131 Hypothetical protein F23H11.1 [Caenorhabditis elegans] ref|NP_497292.1| BMP receptor Associated protein family member (bra-2) [Caenorhabditis elegans] 1.0E-118
blast CAE69140 Hypothetical protein CBG15170 [Caenorhabditis briggsae] 5.0E-84
blast CAA94138 Hypothetical protein F54B11.6 [Caenorhabditis elegans] ref|NP_510277.1| BMP receptor Associated protein family member (bra-1) [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:185430_AT
atattcacctatcgccgatcgacaaggatctcggagatgcggcgttagaaaataatgtgc
ggcagtatcatctcgatggagtggtcgtcagtgaagggatgaaacgaatgataatcgacc
tgcaacgtcattggctcagtgagtatcacgcgtcacgtgagaagtgtcttgtagagctta
ccgagaagttgcatcaagaattcatgatggatcaacagaaaattcgatcggaactcttac
aacagttcaaagacgagttggaacagacaagagccgatctagaaaacaaacacagagaga
acttgaagatggaaagtgcaaagttgaatgaaaagcataaaagagagttggttgcatcaa
gaaagaaacaatggtgctggtcgtgtgataatgaggctatataccattgctgctggaata
ccgcatattgcagtgttgaatgccaacagggacattggcagactcatcgaaagttttgcc
gcagaaagaaaggaaacaatgctcctggagcaccaagtgtacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCACCTATCGCCGATCGACAA 524 19 89 Antisense
GGATCTCGGAGATGCGGCGTTAGAA 606 511 114 Antisense
TGTGCGGCAGTATCATCTCGATGGA 89 557 144 Antisense
GACCTGCAACGTCATTGGCTCAGTG 176 383 205 Antisense
GGCTCAGTGAGTATCACGCGTCACG 640 537 221 Antisense
GAAGTGTCTTGTAGAGCTTACCGAG 453 335 249 Antisense
GAGGCTATATACCATTGCTGCTGGA 416 405 481 Antisense
TGCTGCTGGAATACCGCATATTGCA 310 581 496 Antisense
ACAGGGACATTGGCAGACTCATCGA 695 105 534 Antisense
GACTCATCGAAAGTTTTGCCGCAGA 471 373 549 Antisense
TGCTCCTGGAGCACCAAGTGTACCA 180 581 588 Antisense
Sequence Source Affymetrix Proprietary Database