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[185428_at] 7TM receptor, sre family

Description Y57A10B.5 /REP_DB=WormBase Gene ID /WP=CE20326 /TR=Q9XWH6 /GB=CAA21692.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 27      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 37
(-1.6)
A 		47.4
(-0.6)
A 		23.1
(-3)
A 		83.4
(3)
A 		60
B 31.9
(-1.1)
A 		81.8
(3)
A 		9.6
(-3)
A 		44.8
(-0.1)
A 		72
C 16.6
(-3)
A 		71.5
(1)
A 		28.7
(-2.1)
A 		98.3
(3)
A 		82
avr 28.5
(-2.1) 		66.9
(2.1) 		20.5
(-3) 		75.5
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 11.6
(-2.9)
A 		37.2
(0.7)
A 		53.1
(3)
A 		13.1
(-2.7)
A 		28.3
(-0.5)
A 		11.1
(-3)
A 		42
B 31.4
(1.2)
A 		40.4
(3)
A 		36.8
(2.3)
A 		26.3
(0.2)
A 		34.2
(1.8)
A 		10.4
(-3)
A 		30
C 23.5
(-1.5)
A 		21.6
(-1.7)
A 		10.2
(-3)
A 		63.6
(3)
A 		32.8
(-0.5)
A 		19.4
(-2)
A 		53
avr 22.2
(-0.5) 		33.1
(2.7) 		33.4
(2.7) 		34.3
(3) 		31.8
(2.3) 		13.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.5
(3)
A 		10.3
(0.4)
A 		6
(-3)
A 		12.2
(2)
A 		8
B 10.2
(-0.3)
A 		20.2
(3)
A 		2.2
(-3)
A 		9.5
(-0.6)
A 		18
C 5.5
(-3)
A 		20.6
(3)
A 		10
(-1.2)
A 		16.6
(1.4)
A 		15
avr 9.7
(-1) 		17
(3) 		6.1
(-3) 		12.8
(0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.1
(-3)
A 		13.2
(3)
A 		11.6
(2.1)
A 		3.3
(-2.4)
A 		8.5
(0.5)
A 		2.7
(-2.7)
A 		11
B 10.9
(1.2)
A 		13.4
(2.7)
A 		8.9
(0)
A 		7
(-1.1)
A 		13.9
(3)
A 		3.9
(-3)
A 		10
C 8.7
(0.6)
A 		6.6
(-0.6)
A 		2.6
(-3)
A 		12.8
(3)
A 		10.6
(1.7)
A 		6.5
(-0.7)
A 		10
avr 7.2
(-0.5) 		11.1
(3) 		7.7
(-0) 		7.7
(-0) 		11
(2.9) 		4.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3137
Sequence Type Exemplar sequence
Representative Public ID Y57A10B.5 NCBI
Target Description Y57A10B.5 /REP_DB=WormBase Gene ID /WP=CE20326 /TR=Q9XWH6 /GB=CAA21692.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064227 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-41) (sre-41) mRNA, complete cds. 11/11 None
SNAP00000034315 ENSEMBL cdna:SNAP chromosome:CEL140:II:12388535:12389742:1 11/11 None
GENEFINDER00000034325 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12388196:12389742:1 11/11 None
Y57A10B.5 ENSEMBL cdna:known chromosome:CEL140:II:12388196:12389742:1 gene:Y57A10B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12388192-12389739(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-41
Ensembl Y57A10B.5
Entrez Gene 190345 Entrez gene
SwissProt Q9XWH6 EMBL-EBI
WormBase CE20326 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21692 Hypothetical protein Y57A10B.5 [Caenorhabditis elegans] ref|NP_496628.1| Serpentine Receptor, class E (epsilon) family member (sre-41) [Caenorhabditis elegans] 1.0E-177
blast CAA21692 Hypothetical protein Y57A10B.5 [Caenorhabditis elegans] ref|NP_496628.1| Serpentine Receptor, class E (epsilon) family member (sre-41) [Caenorhabditis elegans] 1.0E-108
blast CAE73494 Hypothetical protein CBG20951 [Caenorhabditis briggsae] 1.0E-107
blast CAA21691 Hypothetical protein Y57A10B.4 [Caenorhabditis elegans] ref|NP_496627.2| Serpentine Receptor, class E (epsilon) family member (sre-42) [Caenorhabditis elegans] 5.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.3E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496628.1 7 26-48,69-91,125-147,168-190,200-222,259-281,291-313
Y57A10B.5 7 26-48,69-91,125-147,168-190,200-222,259-281,291-313
SNAP00000034315 5 12-34,55-77,87-109,146-168,178-200
GENEFINDER00000034325 7 26-48,69-91,125-147,168-190,200-222,259-281,291-313
Sequence
Target Sequence 
>C. ELEGANS:185428_AT
attcacgactacgagcacgtacgccgtcgccatatcccagtaatccttatcatactagtt
aatattattacaattccatatgtctattttgtgatccataaccggataccattcctcgta
gtttatggtcaatgggcggtttgcattgtgttatccacgtcagcctacgctacaattctt
cgaatcaatttcgtgttccgaaatcagatgcggaagaatataaccgaccatgaaaaatat
tcattggcgagaaagtttcaagttgaggagaatattcgaagcttgaagctcgccaagtac
acagttctcgtgggctccgtgcacatttccctaactctcctcgtgttcacctgcctcatg
ctcggattcttcgaaagacttcaagtgttcttcgttcacatactagagaatctcatctta
ttaccagccttagtaatggcagttgctcttttatgttgctcggtggcttggcgacacgag
ttcatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCACGACTACGAGCACGTACGCC 659 9 484 Antisense
GCCATATCCCAGTAATCCTTATCAT 604 281 512 Antisense
TAACCGGATACCATTCCTCGTAGTT 246 637 582 Antisense
TGCATTGTGTTATCCACGTCAGCCT 169 579 625 Antisense
TCAGCCTACGCTACAATTCTTCGAA 253 625 643 Antisense
GAAGCTTGAAGCTCGCCAAGTACAC 15 343 761 Antisense
CAAGTACACAGTTCTCGTGGGCTCC 21 185 777 Antisense
GACTTCAAGTGTTCTTCGTTCACAT 435 371 860 Antisense
ATCTCATCTTATTACCAGCCTTAGT 509 31 893 Antisense
GTTGCTCTTTTATGTTGCTCGGTGG 513 439 925 Antisense
TGGCTTGGCGACACGAGTTCATGCA 160 545 947 Antisense
Sequence Source Affymetrix Proprietary Database