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[185426_at]

Description T09A12.3 /REP_DB=WormBase Gene ID /WP=CE17232 /TR=O61220 /GB=AAC04431.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 22      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 187.3
(0.1)
A 		131.9
(-1.8)
A 		95.7
(-3)
A 		270.2
(3)
A 		175
B 229.5
(3)
M 		129.9
(0.2)
A 		15.1
(-3)
A 		189.6
(1.9)
P 		214
C 227.6
(3)
P 		31.3
(-3)
A 		142.9
(0.4)
A 		205.6
(2.3)
P 		196
avr 214.8
(2.7) 		97.7
(-2.4) 		84.6
(-3) 		221.8
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 150
(3)
A 		139
(2.5)
A 		82.5
(-0.2)
A 		22.1
(-3)
A 		63.2
(-1.1)
A 		133.4
(2.2)
A 		128
B 144.1
(2.1)
A 		163.7
(3)
A 		122.1
(1.1)
A 		32.1
(-3)
A 		120.9
(1)
A 		117.5
(0.9)
A 		132
C 114.7
(1.9)
P 		133.2
(3)
A 		111
(1.7)
A 		27.9
(-3)
A 		95.7
(0.9)
A 		85.4
(0.3)
A 		105
avr 136.3
(2.5) 		145.3
(3) 		105.2
(1) 		27.4
(-3) 		93.3
(0.4) 		112.1
(1.3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 68.2
(3)
A 		28.6
(-2.5)
A 		25
(-3)
A 		39.6
(-1)
A 		43
B 73.2
(3)
M 		32.1
(-0.5)
A 		3.5
(-3)
A 		40.4
(0.2)
P 		70
C 75.3
(3)
P 		9
(-3)
A 		49.8
(0.7)
A 		34.7
(-0.7)
P 		66
avr 72.2
(3) 		23.2
(-3) 		26.1
(-2.6) 		38.2
(-1.2) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 27.7
(0)
A 		49.5
(3)
A 		18
(-1.3)
A 		5.6
(-3)
A 		19.1
(-1.2)
A 		32.5
(0.7)
A 		44
B 50.1
(2.4)
A 		54.5
(3)
A 		29.7
(-0.2)
A 		8.5
(-3)
A 		49.1
(2.3)
A 		43.8
(1.6)
A 		46
C 42.5
(3)
P 		40.7
(2.7)
A 		28.2
(0.7)
A 		5.6
(-3)
A 		31
(1.1)
A 		28.6
(0.7)
A 		37
avr 40.1
(1.8) 		48.2
(3) 		25.3
(-0.3) 		6.6
(-3) 		33.1
(0.8) 		35
(1.1) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10105
Sequence Type Exemplar sequence
Representative Public ID T09A12.3 NCBI
Target Description T09A12.3 /REP_DB=WormBase Gene ID /WP=CE17232 /TR=O61220 /GB=AAC04431.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068979 NCBI Caenorhabditis elegans Osm-9 and Capsaicin receptor-Related family member (ocr-2) (ocr-2) mRNA, complete cds. 11/11 None
SNAP00000044387 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8213886:8220017:-1 11/11 None
GENEFINDER00000044394 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8213900:8220017:-1 11/11 None
T09A12.3 ENSEMBL cdna:known chromosome:CEL140:IV:8213807:8220017:-1 gene:T09A12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8213891-8220023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ocr-2
Ensembl T09A12.3
Entrez Gene 188314 Entrez gene
SwissProt O61220 EMBL-EBI
WormBase CE17232 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC04431 Osm-9 and capsaicin receptor-related protein 2 [Caenorhabditis elegans] ref|NP_501380.1| Osm-9 and Capsaicin receptor-Related family member (ocr-2) [Caenorhabditis elegans] 0.0
blast CAE58437 Hypothetical protein CBG01572 [Caenorhabditis briggsae] 0.0
blast CAA98449 Hypothetical protein F28H7.10 [Caenorhabditis elegans] emb|CAA96644.1| Hypothetical protein F28H7.10 [Caenorhabditis elegans] ref|NP_505748.1| Osm-9 and Capsaicin receptor-Related family member (ocr-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 4.4E-12
Pfam IPR002110 EMBL-EBI Ankyrin 0.0026
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501380.1 7 426-448,517-536,549-571,586-608,610-627,632-654,742-764
T09A12.3 7 426-448,517-536,549-571,586-608,610-627,632-654,742-764
SNAP00000044387 7 426-448,517-536,549-571,586-608,610-627,632-654,742-764
GENEFINDER00000044394 7 426-448,517-536,549-571,586-608,610-627,632-654,742-764
Sequence
Target Sequence 
>C. ELEGANS:185426_AT
aatcacccattgaagctttcgttcgtacatttattctaacaattggagagtttacagtac
tttaccgtaaccttgctctttgtcccgccaatacgatggtttggattggaaaagttgtat
tcattcttttcgaattgttcgtaagtattatgcagtttaatatgcttattgccatgatga
cacgtacatatgaaacaatcttccagacacaactggagtataaacgacagagagctcaag
taattttgatgttagagctttctttgagtccaaaagaacgtcaccaatatcttctgaaat
actcaagaccaactggaacaaacaagaaaacaagaagtttggttgtcagcaagaaatcag
cgttttcccgcgactccaaaaagggacagaaagtactggaagaaaagatgaaaaagatga
tcgaagagaaaaaagcagtgttgaaacggaaaatgaaggatatggaaatcaaggaaggaa
tccgtcccgtcactggatacagtcgtacacctcgtccacatactcaatatatgaatcgag
gggctggtggaggtgccaatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACCCATTGAAGCTTTCGTTCG 228 169 2123 Antisense
GCTTTCGTTCGTACATTTATTCTAA 155 305 2137 Antisense
CAGTACTTTACCGTAACCTTGCTCT 132 189 2177 Antisense
CTTTGTCCCGCCAATACGATGGTTT 686 215 2200 Antisense
GATGTTAGAGCTTTCTTTGAGTCCA 32 411 2370 Antisense
GAACGTCACCAATATCTTCTGAAAT 131 349 2398 Antisense
GCAAGAAATCAGCGTTTTCCCGCGA 409 315 2471 Antisense
TCAAGGAAGGAATCCGTCCCGTCAC 539 625 2591 Antisense
CACTGGATACAGTCGTACACCTCGT 351 199 2613 Antisense
ACCTCGTCCACATACTCAATATATG 140 89 2631 Antisense
AGGGGCTGGTGGAGGTGCCAATGGT 103 57 2661 Antisense
Sequence Source Affymetrix Proprietary Database