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[185424_s_at]

Description F33D4.6A /REP_DB=WormBase Gene ID /WP=CE17036 /TR=O44190 /GB=AAB88378.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2022
1 2 3 4 range
A 38.4
(-3)
A 		1763.2
(2.3)
P 		1988.6
(3)
P 		80.8
(-2.9)
A 		1950
B 23.9
(-3)
A 		1493.8
(1.6)
P 		1947.5
(3)
P 		41.8
(-2.9)
A 		1924
C 31.8
(-3)
A 		1504
(1.4)
P 		2046.3
(3)
P 		105.7
(-2.8)
A 		2015
avr 31.4
(-3) 		1587
(1.8) 		1994.1
(3) 		76.1
(-2.9) 		1963

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1912
1 2 3 4 5 6 range
A 131.3
(-3)
A 		1638.8
(1.8)
P 		689.4
(-1.2)
P 		2007.6
(3)
P 		1049
(-0.1)
P 		238.5
(-2.7)
P 		1876
B 95.4
(-3)
M 		861.1
(0.5)
P 		681.3
(-0.3)
P 		1398.1
(3)
P 		1053.2
(1.4)
P 		272.8
(-2.2)
P 		1303
C 116
(-3)
A 		957.5
(0.6)
P 		1239
(1.8)
P 		1533.9
(3)
P 		1453.1
(2.7)
P 		268.8
(-2.4)
P 		1418
avr 114.2
(-3) 		1152.5
(1.1) 		869.9
(-0) 		1646.5
(3) 		1185.1
(1.2) 		260
(-2.4) 		1532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 706
1 2 3 4 range
A 14
(-3)
A 		382.7
(1.4)
P 		519.9
(3)
P 		11.8
(-3)
A 		508
B 7.6
(-3)
A 		368.9
(1.9)
P 		451.3
(3)
P 		8.9
(-3)
A 		444
C 10.5
(-3)
A 		432.4
(0.6)
P 		713.2
(3)
P 		17.8
(-2.9)
A 		703
avr 10.7
(-3) 		394.7
(1.2) 		561.5
(3) 		12.8
(-3) 		551

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 559
1 2 3 4 5 6 range
A 24.2
(-3)
A 		582.8
(3)
P 		150.1
(-1.6)
P 		509.2
(2.2)
P 		316.5
(0.1)
P 		58.1
(-2.6)
P 		559
B 33.2
(-3)
M 		286.6
(0.9)
P 		165.4
(-1)
P 		370.3
(2.1)
P 		427.9
(3)
P 		101.7
(-2)
P 		395
C 43
(-3)
A 		292.2
(0.5)
P 		315.4
(0.8)
P 		308.5
(0.7)
P 		470.2
(3)
P 		90
(-2.3)
P 		427
avr 33.5
(-3) 		387.2
(2.7) 		210.3
(-0.1) 		396
(2.9) 		404.9
(3) 		83.3
(-2.2) 		371
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185424_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9914
Sequence Type Exemplar sequence
Representative Public ID F33D4.6A NCBI
Target Description F33D4.6A /REP_DB=WormBase Gene ID /WP=CE17036 /TR=O44190 /GB=AAB88378.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068859(11), NM_068860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068859 NCBI Caenorhabditis elegans F33D4.6b (F33D4.6) mRNA, complete cds. 11/11 A 
NM_068860 NCBI Caenorhabditis elegans F33D4.6a (F33D4.6) mRNA, complete cds. 11/11 None
F33D4.6b ENSEMBL cdna:known chromosome:CEL140:IV:7714157:7717993:-1 gene:F33D4.6 11/11 A 
F33D4.6a ENSEMBL cdna:known chromosome:CEL140:IV:7715098:7717993:-1 gene:F33D4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7715274-7717999(-) 100.0 100.0
Public Domain and Genome References
Ensembl F33D4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88379 Hypothetical protein F33D4.6b [Caenorhabditis elegans] ref|NP_501260.2| F33D4.6b [Caenorhabditis elegans] 0.0
blast AAB88378 Hypothetical protein F33D4.6a [Caenorhabditis elegans] ref|NP_501261.2| F33D4.6a [Caenorhabditis elegans] 1.0E-144
blast AAB88379 Hypothetical protein F33D4.6b [Caenorhabditis elegans] ref|NP_501260.2| F33D4.6b [Caenorhabditis elegans] 1.0E-143
blast AAB88378 Hypothetical protein F33D4.6a [Caenorhabditis elegans] ref|NP_501261.2| F33D4.6a [Caenorhabditis elegans] 1.0E-142
blast CAE61947 Hypothetical protein CBG05945 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:185424_S_AT
tgccgctcaaccagtcactgaaatcatgtatcgtccggtaaccagagacggaaagactgt
ctacgaacaggttgttgttttgaaagaagcgaacggatcagtcaaaattcttccaaacac
cttgcttcaacagttacctgaagtttcgacaaagagagtagagattaaacaagtgaaatc
ccggtctgaggctactgaattcttggccccaacattccctccaatgatcaacttgttcac
tgatccaacaaccactaccactccaaccactaccgaagaaccagaagtcacgacaattga
agaagttgagcaagagacaattaaaccaaaacgcaagtcccttccaagacgaaagattca
ttatcttgaaaaaaagggaaaagacatgcattctcgtcaatttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGCTCAACCAGTCACTGAAATC 535 585 666 Antisense
AATCATGTATCGTCCGGTAACCAGA 671 165 687 Antisense
AAATTCTTCCAAACACCTTGCTTCA 343 115 770 Antisense
ACACCTTGCTTCAACAGTTACCTGA 264 109 782 Antisense
TGAAATCCCGGTCTGAGGCTACTGA 205 571 839 Antisense
TGAGGCTACTGAATTCTTGGCCCCA 271 567 852 Antisense
ATTCCCTCCAATGATCAACTTGTTC 437 9 879 Antisense
TGTTCACTGATCCAACAACCACTAC 706 559 899 Antisense
TCCAACCACTACCGAAGAACCAGAA 91 587 927 Antisense
ACGCAAGTCCCTTCCAAGACGAAAG 377 91 996 Antisense
AAGACATGCATTCTCGTCAATTTGG 197 153 1046 Antisense
Sequence Source Affymetrix Proprietary Database