[Home] | [Total List]

[185422_at]

Description F41H10.2 /REP_DB=WormBase Gene ID /WP=CE10274 /TR=Q20301 /GB=AAK29802.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 20.3
(-3)
A 		34.7
(-1.7)
A 		85
(3)
A 		54.1
(0.1)
A 		65
B 21.4
(-3)
A 		76.6
(3)
A 		63.2
(1.5)
A 		40.2
(-1)
A 		55
C 77.1
(2.8)
A 		78.5
(3)
A 		24.4
(-3)
A 		58.4
(0.8)
A 		54
avr 39.6
(-3) 		63.3
(3) 		57.5
(1.5) 		50.9
(-0.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 101.7
(3)
A 		29.9
(-3)
A 		100.6
(2.9)
A 		30.5
(-2.9)
A 		53.5
(-1)
A 		68.8
(0.3)
A 		72
B 36.8
(-3)
A 		46.7
(-2)
A 		96.6
(3)
A 		56.9
(-1)
A 		42.7
(-2.4)
A 		46.8
(-2)
A 		60
C 36.9
(-0.2)
A 		54.5
(3)
A 		49.2
(2)
A 		49.1
(2)
A 		21.5
(-3)
A 		37
(-0.2)
A 		33
avr 58.5
(-0.3) 		43.7
(-2.4) 		82.1
(3) 		45.5
(-2.1) 		39.2
(-3) 		50.9
(-1.4) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.4
(-3)
A 		7.5
(-3)
A 		22.2
(3)
A 		7.9
(-2.8)
A 		15
B 6.8
(-3)
A 		18.9
(3)
A 		14.6
(0.9)
A 		8.6
(-2.1)
A 		12
C 25.5
(3)
A 		22.6
(2)
A 		8.5
(-3)
A 		9.8
(-2.5)
A 		17
avr 13.2
(0.5) 		16.3
(3) 		15.1
(2) 		8.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 18.8
(1.7)
A 		10.7
(-1.7)
A 		21.9
(3)
A 		7.7
(-3)
A 		16.1
(0.5)
A 		16.8
(0.8)
A 		14
B 12.8
(-3)
A 		15.6
(-1.4)
A 		23.5
(3)
A 		15.1
(-1.7)
A 		17.3
(-0.5)
A 		17.4
(-0.4)
A 		11
C 13.7
(1.2)
A 		16.6
(3)
A 		12.5
(0.5)
A 		9.9
(-1.1)
A 		6.9
(-3)
A 		12.4
(0.4)
A 		10
avr 15.1
(-0) 		14.3
(-0.6) 		19.3
(3) 		10.9
(-3) 		13.4
(-1.2) 		15.5
(0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11148
Sequence Type Exemplar sequence
Representative Public ID F41H10.2 NCBI
Target Description F41H10.2 /REP_DB=WormBase Gene ID /WP=CE10274 /TR=Q20301 /GB=AAK29802.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068393 NCBI Caenorhabditis elegans F41H10.2 (F41H10.2) mRNA, complete cds. 11/11 None
SNAP00000003909 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5381623:5382333:1 11/11 None
GENEFINDER00000003922 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5381623:5382333:1 11/11 None
F41H10.2 ENSEMBL cdna:known chromosome:CEL140:IV:5381623:5383853:1 gene:F41H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5381628-5382339(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H10.2
Entrez Gene 185642 Entrez gene
SwissProt Q20301 EMBL-EBI
WormBase CE10274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29802 Hypothetical protein F41H10.2 [Caenorhabditis elegans] ref|NP_500794.1| F41H10.2 [Caenorhabditis elegans] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:185422_AT
agaaacgacgtactccagttctcatgactccgatgaatactatgatcgtttgagaaacat
gattttcaagaatctggaaactccagggacaccaatcactaagaaactacaaggtacagg
cgatcctcatgcgaggcaactgctccgcaagcgtcttctacgcaagaacaacaaaaaaac
gtgtgaccaggaactatcctttgtgaatgataatattcggtactatcaactgatagattt
tgcgcagagaacaaggtgccggtgggatctgtacagcttatattatctcaaaactgcagc
tcgtcgaagctacggatacagttctaaaaatgcggaattgacagccaaatctgaagaccc
agcagttcaactcctggatcccaagaagtcagctcttcgctggatgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAACGACGTACTCCAGTTCTCAT 332 73 42 Antisense
CTCCAGTTCTCATGACTCCGATGAA 649 235 54 Antisense
AAACTCCAGGGACACCAATCACTAA 525 125 119 Antisense
CAAGGTACAGGCGATCCTCATGCGA 5 183 151 Antisense
CTCATGCGAGGCAACTGCTCCGCAA 427 229 167 Antisense
CTCCGCAAGCGTCTTCTACGCAAGA 586 233 184 Antisense
CAAGGTGCCGGTGGGATCTGTACAG 497 183 293 Antisense
AACTGCAGCTCGTCGAAGCTACGGA 466 141 333 Antisense
GACAGCCAAATCTGAAGACCCAGCA 697 367 381 Antisense
GACCCAGCAGTTCAACTCCTGGATC 464 381 397 Antisense
GAAGTCAGCTCTTCGCTGGATGCTC 299 337 426 Antisense
Sequence Source Affymetrix Proprietary Database