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[185420_at]

Description C24D10.2 /REP_DB=WormBase Gene ID /WP=CE16875 /TR=O44135 /GB=AAB88315.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 5.4
(-2.7)
A 		3.8
(-3)
A 		6.3
(-2.5)
A 		34.7
(3)
A 		31
B 2.1
(-1.6)
A 		3
(-0.8)
A 		6.9
(3)
A 		0.7
(-3)
A 		6
C 2
(-3)
A 		3.3
(-2.8)
A 		2.4
(-2.9)
A 		34.1
(3)
A 		32
avr 3.2
(-3) 		3.4
(-2.9) 		5.2
(-2.4) 		23.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 7.4
(-2.8)
A 		4.2
(-2.9)
A 		19
(-2.4)
A 		2.6
(-3)
A 		94.2
(0.4)
A 		165
(3)
P 		162
B 0.7
(-3)
A 		3
(-2.9)
A 		3.2
(-2.9)
A 		8.9
(-2.7)
A 		91
(0.5)
P 		154.7
(3)
P 		154
C 1.5
(-3)
A 		3.6
(-2.9)
A 		8.6
(-2.7)
A 		4.3
(-2.9)
A 		95.4
(0.9)
A 		145.5
(3)
P 		144
avr 3.2
(-3) 		3.6
(-3) 		10.3
(-2.7) 		5.3
(-2.9) 		93.5
(0.6) 		155.1
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(-1.3)
A 		0.8
(-3)
A 		1.6
(-1.9)
A 		5.1
(3)
A 		4
B 0.7
(-0.9)
A 		0.7
(-0.9)
A 		1.6
(3)
A 		0.2
(-3)
A 		1
C 0.7
(-3)
A 		0.9
(-2.8)
A 		0.8
(-2.9)
A 		5.8
(3)
A 		5
avr 1.1
(-2.4) 		0.8
(-3) 		1.3
(-2) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		1.5
(-2.9)
A 		4.1
(-2.5)
A 		0.7
(-3)
A 		28.4
(1.2)
A 		40.2
(3)
P 		40
B 0.2
(-3)
A 		1
(-2.9)
A 		0.8
(-2.9)
A 		2.4
(-2.8)
A 		37
(0.8)
P 		57.7
(3)
P 		58
C 0.6
(-3)
A 		1.1
(-2.9)
A 		2.2
(-2.8)
A 		0.9
(-3)
A 		30.9
(0.8)
A 		48.7
(3)
P 		48
avr 0.7
(-3) 		1.2
(-2.9) 		2.4
(-2.8) 		1.3
(-2.9) 		32.1
(0.9) 		48.9
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10796
Sequence Type Exemplar sequence
Representative Public ID C24D10.2 NCBI
Target Description C24D10.2 /REP_DB=WormBase Gene ID /WP=CE16875 /TR=O44135 /GB=AAB88315.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068330 NCBI Caenorhabditis elegans C24D10.2 (C24D10.2) mRNA, complete cds. 11/11 None
SNAP00000024207 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5163732:5164250:1 11/11 None
GENEFINDER00000024212 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5163732:5164250:1 11/11 None
C24D10.2 ENSEMBL cdna:known chromosome:CEL140:IV:5163347:5164281:1 gene:C24D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5163737-5164256(+) 79.07 100.0
Public Domain and Genome References
Gene Title
Ensembl C24D10.2
Entrez Gene 177290 Entrez gene
SwissProt O44135 EMBL-EBI
WormBase CE16875 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88315 Hypothetical protein C24D10.2 [Caenorhabditis elegans] ref|NP_500731.1| C24D10.2 [Caenorhabditis elegans] 2.0E-34
blast NP_494876 F11G11.4 [Caenorhabditis elegans] gb|AAB37839.1| Hypothetical protein F11G11.4 [Caenorhabditis elegans] 1.0E-31
blast AAB88315 Hypothetical protein C24D10.2 [Caenorhabditis elegans] ref|NP_500731.1| C24D10.2 [Caenorhabditis elegans] 5.0E-21
blast NP_494876 F11G11.4 [Caenorhabditis elegans] gb|AAB37839.1| Hypothetical protein F11G11.4 [Caenorhabditis elegans] 6.0E-19
blast CAE59043 Hypothetical protein CBG02324 [Caenorhabditis briggsae] 4.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500731.1 1 81-103
C24D10.2 1 81-103
SNAP00000024207 1 127-149
GENEFINDER00000024212 1 127-149
Sequence
Target Sequence 
>C. ELEGANS:185420_AT
ggatgcaggtgatccaacaccaggcgctaaacctcaaggaggatcgtcggcaatgctgga
tctacttggaacactgaacaagaaggaagacaaaaagaagaaggataagaagggcaaaaa
aggaaagaagtcgaagggaaagtcgaagaccaagaaagtcagaaagacagacaagtttga
gtcgcaaaacttcttgtttcgcatcgagggaaccatattttgtgctggaatcgttgtcgg
attggtggtgctgctcgtcttcgttgcagttgcaatcttcttcagcgtgaagtctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCAGGTGATCCAACACCAGGC 629 511 39 Antisense
AACACCAGGCGCTAAACCTCAAGGA 29 117 54 Antisense
ACCTCAAGGAGGATCGTCGGCAATG 12 87 69 Antisense
GTCGGCAATGCTGGATCTACTTGGA 134 473 84 Antisense
GCTGGATCTACTTGGAACACTGAAC 663 293 93 Antisense
GAAAGACAGACAAGTTTGAGTCGCA 470 359 200 Antisense
GAGTCGCAAAACTTCTTGTTTCGCA 570 399 217 Antisense
CAAAACTTCTTGTTTCGCATCGAGG 329 191 223 Antisense
CGCATCGAGGGAACCATATTTTGTG 154 255 238 Antisense
CGTCTTCGTTGCAGTTGCAATCTTC 40 247 294 Antisense
GCAATCTTCTTCAGCGTGAAGTCTG 155 323 310 Antisense
Sequence Source Affymetrix Proprietary Database