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[185419_at]

Description F42A10.1 /REP_DB=WormBase Gene ID /WP=CE01292 /TR=Q20306 /GB=AAA19072.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 77      6grp_total > 47      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1892
1 2 3 4 range
A 1968.3
(0.2)
P 		1462.4
(-3)
P 		1736.2
(-1.3)
P 		2410.7
(3)
P 		948
B 1557.8
(-3)
P 		1734.1
(-2.4)
P 		1647.8
(-2.7)
P 		3354.8
(3)
P 		1797
C 1987.6
(-1)
P 		1633.9
(-3)
P 		1912.9
(-1.4)
P 		2681.8
(3)
P 		1048
avr 1837.9
(-1.9) 		1610.1
(-3) 		1765.6
(-2.2) 		2815.8
(3) 		1206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 692
1 2 3 4 5 6 range
A 1390.5
(2)
P 		1343.7
(1.1)
P 		1131.2
(-3)
P 		1356.2
(1.3)
P 		1139.1
(-2.8)
P 		1443.1
(3)
P 		312
B 1619.1
(2.4)
P 		1461.1
(0.8)
P 		1091.8
(-3)
P 		1375.9
(-0.1)
P 		1143.1
(-2.5)
P 		1679.9
(3)
P 		588
C 1257.6
(-1.5)
P 		1452.2
(0.2)
P 		1209.8
(-1.9)
P 		1271.6
(-1.4)
P 		1084.2
(-3)
P 		1775.8
(3)
P 		692
avr 1422.4
(0.5) 		1419
(0.5) 		1144.3
(-2.7) 		1334.6
(-0.5) 		1122.1
(-3) 		1632.9
(3) 		511
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 716.7
(3)
P 		317.4
(-3)
P 		453.9
(-0.9)
P 		352.9
(-2.5)
P 		399
B 496.8
(-0.9)
P 		428.3
(-2.2)
P 		381.8
(-3)
P 		714.9
(3)
P 		333
C 658
(2.8)
P 		469.7
(-2.5)
P 		666.7
(3)
P 		452.2
(-3)
P 		215
avr 623.8
(3) 		405.1
(-3) 		500.8
(-0.4) 		506.7
(-0.2) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 256.3
(-2.7)
P 		477.9
(3)
P 		246.4
(-3)
P 		344
(-0.5)
P 		343.7
(-0.5)
P 		351.3
(-0.3)
P 		232
B 563.4
(2)
P 		486.3
(0.7)
P 		265.1
(-3)
P 		364.4
(-1.4)
P 		464.4
(0.3)
P 		626.4
(3)
P 		361
C 466.1
(0.7)
P 		443.1
(0.3)
P 		307.9
(-2.1)
P 		255.7
(-3)
P 		350.8
(-1.3)
P 		594.5
(3)
P 		339
avr 428.6
(0.7) 		469.1
(1.7) 		273.1
(-3) 		321.4
(-1.8) 		386.3
(-0.3) 		524.1
(3) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7788
Sequence Type Exemplar sequence
Representative Public ID F42A10.1 NCBI
Target Description F42A10.1 /REP_DB=WormBase Gene ID /WP=CE01292 /TR=Q20306 /GB=AAA19072.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065938 NCBI Caenorhabditis elegans F42A10.1 (F42A10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011659 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6173345:6175992:1 11/11 None
SNAP00000011650 ENSEMBL cdna:SNAP chromosome:CEL140:III:6173357:6175992:1 11/11 None
F42A10.1.2 ENSEMBL cdna:known chromosome:CEL140:III:6173245:6176105:1 gene:F42A10.1 11/11 None
F42A10.1.1 ENSEMBL cdna:known chromosome:CEL140:III:6173343:6176105:1 gene:F42A10.1 11/11 None
F42A10.1.3 ENSEMBL cdna:known chromosome:CEL140:III:6173345:6176105:1 gene:F42A10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6173355-6175991(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A10.1
Entrez Gene 175873 Entrez gene
SwissProt Q20306 EMBL-EBI
WormBase CE01292 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262005_AT ABC transporter family protein at
CANINE:1589706_AT similar to ATP-binding cassette, sub-family F (GCN20), member 3 cfa
CANINE_2:CFA.13882.1.A1_AT similar to ATP-binding cassette, sub-family F (GCN20), member 3 cfa
CANINE_2:CFA.21512.1.S1_S_AT similar to ATP-binding cassette, sub-family F (GCN20), member 3 cfa
CANINE_2:CFA.4058.1.S1_AT similar to ATP-binding cassette, sub-family F (GCN20), member 3 cfa
CANINE_2:CFA.4058.1.S1_S_AT similar to ATP-binding cassette, sub-family F (GCN20), member 3 cfa
DROSOPHILA_2:1636253_AT dm
DROSGENOME1:149061_AT dm
CHICKEN:GGA.15365.1.S1_S_AT similar to hypothetical protein FLJ11198 gga
CHICKEN:GGAAFFX.5344.3.S1_S_AT similar to hypothetical protein FLJ11198 gga
HU35KSUBA:U66685_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
HU35KSUBD:RC_AA437120_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
HG-U133A:202394_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
HG-U133_PLUS_2:202394_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
HG-U133A_2:202394_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
U133_X3P:G8922935_3P_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
HG-U95AV2:38830_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
HG-U95D:73669_AT ATP-binding cassette, sub-family F (GCN20), member 3 hs
MG-U74AV2:96619_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOE430A:1426747_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOUSE430A_2:1426747_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOUSE430_2:1426747_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOE430A:1426748_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOUSE430A_2:1426748_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOUSE430_2:1426748_S_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOE430A:1452177_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOUSE430A_2:1452177_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MOUSE430_2:1452177_AT ATP-binding cassette, sub-family F (GCN20), member 3 mm
MG-U74CV2:132058_AT ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone MGC:41237 IMAGE:1430389) mm
MU19KSUBB:TC33074_AT ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone MGC:41237 IMAGE:1430389) mm
MU19KSUBB:TC33708_AT ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone MGC:41237 IMAGE:1430389) mm
RG-U34C:RC_AI169668_AT ATP-binding cassette, sub-family F (GCN20), member 3 (predicted) rn
RAE230A:1377280_AT ATP-binding cassette, sub-family F (GCN20), member 3 (predicted) rn
RAT230_2:1377280_AT ATP-binding cassette, sub-family F (GCN20), member 3 (predicted) rn
RAE230A:1371456_AT ATP-binding cassette, sub-family F (GCN20), member 3 (predicted) rn
RAT230_2:1371456_AT ATP-binding cassette, sub-family F (GCN20), member 3 (predicted) rn
YEAST_2:1772832_AT Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19072 Hypothetical protein F42A10.1 [Caenorhabditis elegans] ref|NP_498339.1| F42A10.1 [Caenorhabditis elegans] 0.0
blast CAE73610 Hypothetical protein CBG21100 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 2.4E-37
Pfam IPR003439 EMBL-EBI ABC transporter 3.1E-39
Pfam IPR003439 EMBL-EBI ABC transporter 2.4E-37
Pfam IPR003439 EMBL-EBI ABC transporter 3.1E-39
Pfam IPR003439 EMBL-EBI ABC transporter 2.4E-37
Pfam IPR003439 EMBL-EBI ABC transporter 3.1E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011650 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:185419_AT
ctccctatcttttccgaaagctcaatctcggaactcatgccaactcccggatttgtattg
tcggagaaaacggagccggtaaaactacactgttgaaacttttgctcgatgatctccaac
catccgttggacttcgaaatgtgaatcgtcgtattcgaattgcctacttcacacagcatc
acgttgatcaattggatatggaaacatcagctattgaggtgttgatgaagaatcatcctg
gaaagactcaagaagattatcgagcagctttgggaagatttggattagctggtgatatgg
ctttgcaatctgttgagacactttctggaggtcaaaagtctcgattggcatttgctaatt
tagccttgatgcagccaaactacttgattcttgacgagcctactaatcacttggatgtcg
aaacggttgaagctcttggaaaagcgcttaatgttttcaatggaggtgtcgttttagttt
ctcacgacgagcaactcatcgagcttgtgtgcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCTATCTTTTCCGAAAGCTCAA 647 233 1649 Antisense
GCTCAATCTCGGAACTCATGCCAAC 90 303 1668 Antisense
CTCATGCCAACTCCCGGATTTGTAT 232 229 1682 Antisense
TTTTGCTCGATGATCTCCAACCATC 556 677 1748 Antisense
GTCGTATTCGAATTGCCTACTTCAC 373 473 1796 Antisense
TACTTCACACAGCATCACGTTGATC 520 645 1813 Antisense
TAGCCTTGATGCAGCCAAACTACTT 382 651 2009 Antisense
ACTACTTGATTCTTGACGAGCCTAC 696 99 2027 Antisense
GGAGGTGTCGTTTTAGTTTCTCACG 528 509 2110 Antisense
GTTTCTCACGACGAGCAACTCATCG 654 449 2125 Antisense
CAACTCATCGAGCTTGTGTGCAAGG 423 187 2140 Antisense
Sequence Source Affymetrix Proprietary Database