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[185418_at]

Description Y73B6A.3 /REP_DB=WormBase Gene ID /WP=CE22960 /TR=Q9N4E4 /GB=AAF36039.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 31      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 184
(1.7)
P 		221.9
(2.7)
P 		234.6
(3)
P 		5.4
(-3)
A 		229
B 175.4
(0.9)
P 		242.1
(2.4)
P 		270.3
(3)
P 		1.8
(-3)
A 		269
C 180
(0.3)
P 		304.7
(3)
P 		224.5
(1.2)
P 		30.9
(-3)
A 		274
avr 179.8
(1.1) 		256.2
(3) 		243.1
(2.7) 		12.7
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 84.6
(-1.8)
P 		175.9
(-0.2)
P 		367.1
(3)
P 		176.2
(-0.2)
P 		48
(-2.4)
P 		10.3
(-3)
A 		357
B 187.6
(1)
P 		254.4
(3)
P 		225.6
(2.1)
P 		116.7
(-1.1)
P 		53.7
(-3)
M 		54.9
(-3)
P 		201
C 150.1
(1.9)
P 		179.5
(3)
P 		131.4
(1.2)
P 		83
(-0.6)
P 		56.5
(-1.6)
A 		20.5
(-3)
A 		159
avr 140.8
(0.2) 		203.3
(1.9) 		241.4
(3) 		125.3
(-0.3) 		52.7
(-2.3) 		28.6
(-3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 67
(3)
P 		48.2
(1.3)
P 		61.3
(2.5)
P 		0.8
(-3)
A 		66
B 55.9
(2.4)
P 		59.8
(2.7)
P 		62.6
(3)
P 		0.4
(-3)
A 		62
C 59.6
(1)
P 		87.6
(3)
P 		78.2
(2.3)
P 		5.2
(-3)
A 		82
avr 60.8
(2.4) 		65.2
(2.8) 		67.4
(3) 		2.1
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 15.6
(-2)
P 		62.6
(1.7)
P 		79.9
(3)
P 		44.7
(0.3)
P 		14.5
(-2.1)
P 		2.5
(-3)
A 		77
B 65.3
(1.2)
P 		84.7
(3)
P 		54.8
(0.2)
P 		30.9
(-2)
P 		21.8
(-2.9)
M 		20.5
(-3)
P 		64
C 55.6
(3)
P 		54.8
(2.9)
P 		33.4
(0.3)
P 		16.7
(-1.8)
P 		18.3
(-1.6)
A 		6.9
(-3)
A 		49
avr 45.5
(0.7) 		67.4
(3) 		56
(1.8) 		30.8
(-0.8) 		18.2
(-2.1) 		10
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9087
Sequence Type Exemplar sequence
Representative Public ID Y73B6A.3 NCBI
Target Description Y73B6A.3 /REP_DB=WormBase Gene ID /WP=CE22960 /TR=Q9N4E4 /GB=AAF36039.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068631 NCBI Caenorhabditis elegans Y73B6A.3 (Y73B6A.3) mRNA, complete cds. 11/11 None
SNAP00000010732 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6738751:6740266:-1 11/11 None
GENEFINDER00000010739 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6738751:6740266:-1 11/11 None
Y73B6A.3 ENSEMBL cdna:known chromosome:CEL140:IV:6738751:6740266:-1 gene:Y73B6A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6738756-6740272(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6A.3
Entrez Gene 190645 Entrez gene
SwissProt Q9N4E4 EMBL-EBI
WormBase CE22960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36039 Hypothetical protein Y73B6A.3 [Caenorhabditis elegans] ref|NP_501032.1| Y73B6A.3 [Caenorhabditis elegans] 5.0E-53
blast AAC47917 Hypothetical protein C01B10.7 [Caenorhabditis elegans] ref|NP_501025.1| C01B10.7 [Caenorhabditis elegans] 1.0E-30
blast CAE69019 Hypothetical protein CBG15019 [Caenorhabditis briggsae] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:185418_AT
ggttcgagttttacttgtagccattgctcttattgcattgattgttcaagtcgactccga
ctcaatgccatggagaatgattatggcgaagcctggagatcgagtggaaatcggatatta
caatccaaaaaacattacgagatttgtgaagaatgcaaaaggagtcggtcaagaacacgt
tttcagagtttgtaatggaaagaataagacaaaatgtggtttttgggagaacgttaagac
aaaaaagaaggtagaaccaaaaactacatacaacaagaagaagaatctattgattattca
aaaagtgtcagcacttgatgcaggaacttacagaactccagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCGAGTTTTACTTGTAGCCATT 189 507 15 Antisense
GTAGCCATTGCTCTTATTGCATTGA 69 457 31 Antisense
ATTGATTGTTCAAGTCGACTCCGAC 425 3 51 Antisense
TCGACTCCGACTCAATGCCATGGAG 342 599 65 Antisense
TGGAGAATGATTATGGCGAAGCCTG 83 549 85 Antisense
GGCGAAGCCTGGAGATCGAGTGGAA 63 543 99 Antisense
GAAGAATGCAAAAGGAGTCGGTCAA 698 337 162 Antisense
GAGTCGGTCAAGAACACGTTTTCAG 109 401 176 Antisense
GAACACGTTTTCAGAGTTTGTAATG 146 347 187 Antisense
GTGTCAGCACTTGATGCAGGAACTT 210 487 319 Antisense
GCAGGAACTTACAGAACTCCAGAAT 329 309 334 Antisense
Sequence Source Affymetrix Proprietary Database