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[185417_at]

Description C10G11.6 /REP_DB=WormBase Gene ID /WP=CE08085 /TR=P91028 /GB=AAB42245.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 28.3
(-1.6)
A 		9.1
(-3)
A 		25.6
(-1.8)
A 		92.6
(3)
A 		84
B 37.8
(3)
A 		8.2
(-2.3)
A 		11.3
(-1.8)
A 		4.6
(-3)
A 		33
C 8
(-2.7)
A 		7.2
(-3)
A 		22.2
(3)
A 		17.1
(1)
A 		15
avr 24.7
(0.3) 		8.2
(-3) 		19.7
(-0.7) 		38.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 19.4
(-2)
A 		6
(-3)
A 		29.1
(-1.3)
A 		20.2
(-2)
A 		55.5
(0.6)
P 		88.5
(3)
A 		83
B 12.7
(-3)
A 		35.5
(2.3)
A 		34.8
(2.2)
A 		32.6
(1.6)
A 		38.4
(3)
A 		27.6
(0.5)
A 		26
C 27.1
(-0.8)
A 		40.6
(1.2)
A 		52.7
(3)
A 		12.8
(-3)
A 		30.8
(-0.3)
A 		24.8
(-1.2)
A 		40
avr 19.7
(-3) 		27.4
(-1.3) 		38.9
(1.2) 		21.9
(-2.5) 		41.6
(1.8) 		47
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.3
(1.3)
A 		2
(-3)
A 		6.7
(-0.6)
A 		13.6
(3)
A 		12
B 12
(3)
A 		2
(-2.5)
A 		2.6
(-2.1)
A 		1
(-3)
A 		11
C 2.6
(-2.5)
A 		2.1
(-3)
A 		7.7
(3)
A 		2.9
(-2.1)
A 		6
avr 8.3
(3) 		2
(-3) 		5.7
(0.5) 		5.8
(0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.6
(-2.5)
A 		2.1
(-3)
A 		6.3
(-1.7)
A 		5.1
(-2.1)
A 		16.7
(1.5)
P 		21.5
(3)
A 		19
B 4.4
(-3)
A 		11.8
(1)
A 		8.4
(-0.9)
A 		8.6
(-0.8)
A 		15.6
(3)
A 		10.3
(0.2)
A 		11
C 10
(1.1)
A 		12.4
(2.4)
A 		13.4
(3)
A 		2.6
(-3)
A 		10
(1.1)
A 		8.3
(0.2)
A 		11
avr 6
(-2.6) 		8.8
(-0.7) 		9.4
(-0.2) 		5.4
(-3) 		14.1
(3) 		13.4
(2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2160
Sequence Type Exemplar sequence
Representative Public ID C10G11.6 NCBI
Target Description C10G11.6 /REP_DB=WormBase Gene ID /WP=CE08085 /TR=P91028 /GB=AAB42245.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059413(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059413 NCBI Caenorhabditis elegans C10G11.6 (C10G11.6) mRNA, complete cds. 9/11 None
C10G11.6 ENSEMBL cdna:known chromosome:CEL140:I:6298141:6301990:1 gene:C10G11.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041172 7/11 Cross Hyb Matching Probes None
SNAP00000041162 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6298069-6301919(+) 97.04 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G11.6
Entrez Gene 182506 Entrez gene
SwissProt P91028 EMBL-EBI
WormBase CE32124 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42245 Hypothetical protein C10G11.6 [Caenorhabditis elegans] ref|NP_491814.2| C10G11.6 [Caenorhabditis elegans] 1.0E-175
blast CAE67157 Hypothetical protein CBG12582 [Caenorhabditis briggsae] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:185417_AT
aacacatcatggcgtactccattccatccaactcctgttcctcctccatcaatccataca
ttcctcaaaggatgtcttccgtctccgtttgttcgaaaaattcccgagatcacacctcgg
cggcattcaacaggaacagaaaacagctctcgattatcctgtttctttttttactctgat
tactcattgaagattcacgttatcgacgagcccccggtctcggcacgacaactctttgtg
aaatacaaaataaaattaaatcatttcagtattaggaataattcgaattcaattttcaga
ccatcttcacctctgggaagacgttcacttcctccgccaggactcgttggaatcaatgtt
cgtggtttattcgttggcaatcgatcaaaccgtcaacagactccggaacccgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACATCATGGCGTACTCCATTCC 453 135 898 Antisense
TCCTCAAAGGATGTCTTCCGTCTCC 626 587 959 Antisense
AAATTCCCGAGATCACACCTCGGCG 496 115 995 Antisense
ACCTCGGCGGCATTCAACAGGAACA 281 87 1011 Antisense
CAGCTCTCGATTATCCTGTTTCTTT 702 203 1041 Antisense
AAGATTCACGTTATCGACGAGCCCC 256 155 1087 Antisense
TCTCGGCACGACAACTCTTTGTGAA 489 611 1115 Antisense
TCAATTTTCAGACCATCTTCACCTC 589 633 1186 Antisense
TTCACCTCTGGGAAGACGTTCACTT 391 687 1203 Antisense
GTTCGTGGTTTATTCGTTGGCAATC 372 439 1255 Antisense
GTCAACAGACTCCGGAACCCGATGA 640 463 1289 Antisense
Sequence Source Affymetrix Proprietary Database