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[185415_at]

Description F36H12.1 /REP_DB=WormBase Gene ID /WP=CE09973 /TR=O76722 /GB=AAC26928.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 21      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 23      6grp_total > 32      4grp_total > 12      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5564
1 2 3 4 range
A 2996.2
(-0.7)
P 		1409.7
(-2.4)
P 		860.7
(-3)
P 		6379.7
(3)
P 		5519
B 3052.8
(-0.6)
P 		1670.5
(-2.2)
P 		954.3
(-3)
P 		6162.7
(3)
P 		5208
C 3001.3
(-0.9)
P 		1678.3
(-2.4)
P 		1156
(-3)
P 		6424.8
(3)
P 		5269
avr 3016.8
(-0.7) 		1586.2
(-2.3) 		990.3
(-3) 		6322.4
(3) 		5332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2419
1 2 3 4 5 6 range
A 2243.9
(0.4)
P 		1884.3
(-0.5)
P 		3309.3
(3)
P 		1636.1
(-1.2)
P 		1548.3
(-1.4)
P 		890.6
(-3)
P 		2419
B 2564.7
(2.2)
P 		2360.7
(1.3)
P 		2758.4
(3)
P 		2101.7
(0.2)
P 		1580.6
(-2.1)
P 		1366.6
(-3)
P 		1392
C 1907.6
(0.1)
P 		2510.3
(3)
P 		1683.9
(-1)
P 		2068.8
(0.9)
P 		1357.8
(-2.5)
P 		1255.3
(-3)
P 		1255
avr 2238.7
(1.5) 		2251.8
(1.6) 		2583.9
(3) 		1935.5
(0.2) 		1495.6
(-1.6) 		1170.8
(-3) 		1413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1092
1 2 3 4 range
A 1090.9
(3)
P 		306
(-2.4)
P 		225
(-3)
P 		933.9
(1.9)
P 		866
B 973.5
(1.1)
P 		412.6
(-1.9)
P 		221.1
(-3)
P 		1313.3
(3)
P 		1092
C 993.5
(2.2)
P 		482.5
(-2.3)
P 		402.9
(-3)
P 		1083.3
(3)
P 		680
avr 1019.3
(2.3) 		400.4
(-2.1) 		283
(-3) 		1110.2
(3) 		827

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 676
1 2 3 4 5 6 range
A 413.7
(-0.7)
P 		670.2
(2.4)
P 		720.7
(3)
P 		415
(-0.6)
P 		467.2
(-0)
P 		216.8
(-3)
P 		504
B 892.4
(3)
P 		785.8
(1.3)
P 		669.8
(-0.5)
P 		556.7
(-2.3)
P 		642.2
(-0.9)
P 		509.6
(-3)
P 		383
C 707.1
(2)
P 		766
(3)
P 		428.6
(-2.8)
P 		416
(-3)
P 		439.4
(-2.6)
P 		420.2
(-2.9)
P 		350
avr 671.1
(1.8) 		740.7
(3) 		606.4
(0.8) 		462.6
(-1.7) 		516.3
(-0.8) 		382.2
(-3) 		359
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10505
Sequence Type Exemplar sequence
Representative Public ID F36H12.1 NCBI
Target Description F36H12.1 /REP_DB=WormBase Gene ID /WP=CE09973 /TR=O76722 /GB=AAC26928.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068369 NCBI Caenorhabditis elegans F36H12.1 (F36H12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000002660 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5290840:5293318:1 11/11 None
F36H12.1 ENSEMBL cdna:known chromosome:CEL140:IV:5290836:5293678:1 gene:F36H12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002648 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5290845-5293324(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.1
Entrez Gene 185393 Entrez gene
SwissProt O76722 EMBL-EBI
WormBase CE09973 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26928 Hypothetical protein F36H12.1 [Caenorhabditis elegans] ref|NP_500770.1| F36H12.1 [Caenorhabditis elegans] 4.0E-45
blast CAE72732 Hypothetical protein CBG19970 [Caenorhabditis briggsae] 1.0E-36
blast CAE72733 Hypothetical protein CBG19972 [Caenorhabditis briggsae] 7.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185415_AT
ctcggcctttcagccgggcaaatgaccttcacggatcaatggaccaagaagagagcaaca
cttcacaaacaactaccagtggtaaccccagaagagccaatctgtccatcagaccgtgtc
caagcagttttcgagcaacttgatcaactccaaaaagcccaacaacgtcttaccgagtac
cttgcatcgtgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGCCTTTCAGCCGGGCAAATGA 516 231 49 Antisense
GCCGGGCAAATGACCTTCACGGATC 130 285 61 Antisense
GACCTTCACGGATCAATGGACCAAG 501 383 72 Antisense
GAGCAACACTTCACAAACAACTACC 315 391 101 Antisense
TACCAGTGGTAACCCCAGAAGAGCC 150 643 122 Antisense
GAAGAGCCAATCTGTCCATCAGACC 564 339 139 Antisense
TCCATCAGACCGTGTCCAAGCAGTT 280 589 153 Antisense
GACCGTGTCCAAGCAGTTTTCGAGC 539 381 160 Antisense
GTTTTCGAGCAACTTGATCAACTCC 154 449 175 Antisense
CAACAACGTCTTACCGAGTACCTTG 256 189 208 Antisense
TTACCGAGTACCTTGCATCGTGTGC 606 681 218 Antisense
Sequence Source Affymetrix Proprietary Database