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[185414_at]

Description R09F10.5 /REP_DB=WormBase Gene ID /WP=CE07439 /TR=Q23028 /GB=AAC69094.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_total > 15      4grp_total > 44      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 240
(0.5)
P 		287.1
(3)
P 		219.3
(-0.5)
P 		171.8
(-3)
P 		115
B 348.1
(2.8)
P 		353.5
(3)
P 		209.9
(-2.6)
P 		200.1
(-3)
P 		153
C 294.7
(0.4)
P 		371
(3)
P 		217.7
(-2.3)
P 		197
(-3)
P 		174
avr 294.3
(1.3) 		337.2
(3) 		215.6
(-1.9) 		189.6
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 341.3
(3)
P 		243.8
(0.7)
P 		152.3
(-1.4)
P 		184.9
(-0.7)
P 		150.5
(-1.5)
P 		85.3
(-3)
A 		256
B 379.7
(3)
P 		317.6
(1.4)
P 		152.6
(-2.7)
P 		155.5
(-2.6)
P 		186.8
(-1.8)
P 		140.1
(-3)
P 		240
C 276.6
(2.7)
P 		284.4
(3)
P 		138.9
(-2.6)
P 		161.8
(-1.7)
P 		128.1
(-3)
P 		172.7
(-1.3)
P 		156
avr 332.5
(3) 		281.9
(1.5) 		147.9
(-2.5) 		167.4
(-2) 		155.1
(-2.3) 		132.7
(-3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 87.4
(3)
P 		62.3
(0.6)
P 		57.3
(0.1)
P 		25.1
(-3)
P 		62
B 111
(3)
P 		87.3
(0.9)
P 		48.6
(-2.5)
P 		42.6
(-3)
P 		68
C 97.6
(2.3)
P 		106.7
(3)
P 		75.9
(0.5)
P 		33.2
(-3)
P 		74
avr 98.7
(3) 		85.4
(1.8) 		60.6
(-0.5) 		33.6
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 62.9
(0.8)
P 		86.7
(3)
P 		33.2
(-1.9)
P 		46.9
(-0.6)
P 		45.4
(-0.8)
P 		20.8
(-3)
A 		66
B 132.1
(3)
P 		105.7
(1.3)
P 		37.1
(-3)
P 		41.2
(-2.7)
P 		75.9
(-0.5)
P 		52.2
(-2)
P 		95
C 102.5
(3)
P 		86.8
(1.7)
P 		35.3
(-2.8)
P 		32.5
(-3)
P 		41.5
(-2.2)
P 		57.8
(-0.8)
P 		70
avr 99.2
(3) 		93.1
(2.4) 		35.2
(-3) 		40.2
(-2.5) 		54.3
(-1.2) 		43.6
(-2.2) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16808
Sequence Type Exemplar sequence
Representative Public ID R09F10.5 NCBI
Target Description R09F10.5 /REP_DB=WormBase Gene ID /WP=CE07439 /TR=Q23028 /GB=AAC69094.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077003 NCBI Caenorhabditis elegans R09F10.5 (R09F10.5) mRNA, complete cds. 11/11 None
SNAP00000002571 ENSEMBL cdna:SNAP chromosome:CEL140:X:8306409:8307617:-1 11/11 None
GENEFINDER00000002583 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8306409:8307617:-1 11/11 None
R09F10.5 ENSEMBL cdna:known chromosome:CEL140:X:8306409:8307617:-1 gene:R09F10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8306407-8307616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09F10.5
Entrez Gene 187750 Entrez gene
SwissProt Q23028 EMBL-EBI
WormBase CE07439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509404 R09F10.5 [Caenorhabditis elegans] gb|AAC69094.1| Hypothetical protein R09F10.5 [Caenorhabditis elegans] 1.0E-76
blast NP_509404 R09F10.5 [Caenorhabditis elegans] gb|AAC69094.1| Hypothetical protein R09F10.5 [Caenorhabditis elegans] 4.0E-74
blast CAE74880 Hypothetical protein CBG22741 [Caenorhabditis briggsae] 2.0E-46
blast CAE74880 Hypothetical protein CBG22741 [Caenorhabditis briggsae] 5.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509404.1 2 4-23,125-144
R09F10.5 2 4-23,125-144
SNAP00000002571 2 4-23,125-144
GENEFINDER00000002583 2 4-23,130-149
Sequence
Target Sequence 
>C. ELEGANS:185414_AT
gcgcttggggccacaaaactcggcttcctatttttcattgctgtgattttcacgaccgcc
agtgacgctcatcccggcaaacggcagtactcggaaaaggatgagtatgaagatgttcct
gaccaaccatttcctggaaaagttcaaataatgccaattgttcaacgtgacacgaaacac
aaaggagtctcagaaactgttcaagaaatcatcagagagttgcctaacgatgagcaatac
gagagaatcggaagaatgttgaacaactcgtacgacgcagttaacaaagaagttgctgag
ggtaaaactgcaatccagcagaaaatggttatggctgaaagaagaactggggagaggaca
aactcagtggttcaaagtgcaggatttttcatcttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCTTGGGGCCACAAAACTCGGCT 183 289 22 Antisense
TCGGCTTCCTATTTTTCATTGCTGT 567 607 41 Antisense
TTGCTGTGATTTTCACGACCGCCAG 404 701 59 Antisense
CATCCCGGCAAACGGCAGTACTCGG 446 209 91 Antisense
GAAGATGTTCCTGACCAACCATTTC 148 337 130 Antisense
TCCTGACCAACCATTTCCTGGAAAA 617 575 138 Antisense
AATGCCAATTGTTCAACGTGACACG 389 167 171 Antisense
GAAATCATCAGAGAGTTGCCTAACG 29 363 226 Antisense
GAACAACTCGTACGACGCAGTTAAC 229 353 282 Antisense
GGGAGAGGACAAACTCAGTGGTTCA 248 495 371 Antisense
AAAGTGCAGGATTTTTCATCTTATC 593 121 395 Antisense
Sequence Source Affymetrix Proprietary Database