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[185413_at]

Description Y75B12B.3 /REP_DB=WormBase Gene ID /WP=CE20372 /TR=Q9XWC0 /GB=CAA21759.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 73      4grp_high_8_8 > 14      6grp_total > 73      4grp_total > 09      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1125
1 2 3 4 range
A 51.8
(-3)
P 		200.1
(-1.9)
M 		270
(-1.5)
P 		896.5
(3)
P 		845
B 58.8
(-3)
A 		151
(-2.5)
P 		316.3
(-1.5)
P 		1112.7
(3)
P 		1054
C 66.6
(-3)
A 		193.7
(-2.3)
P 		216.8
(-2.2)
P 		1176.7
(3)
P 		1110
avr 59.1
(-3) 		181.6
(-2.3) 		267.7
(-1.8) 		1062
(3) 		1003

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 550
1 2 3 4 5 6 range
A 74.2
(-3)
A 		306.2
(-0.2)
P 		576.8
(3)
P 		520.4
(2.3)
P 		263
(-0.7)
P 		307.8
(-0.2)
P 		503
B 147.2
(-3)
P 		465.2
(1)
P 		624
(3)
P 		394.6
(0.1)
P 		443.8
(0.7)
P 		584
(2.5)
P 		477
C 122
(-3)
P 		361.4
(0.2)
P 		402.5
(0.7)
P 		577.9
(3)
P 		382.8
(0.4)
P 		459.1
(1.4)
P 		456
avr 114.5
(-3) 		377.6
(0.8) 		534.4
(3) 		497.6
(2.5) 		363.2
(0.6) 		450.3
(1.8) 		420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 18.9
(-3)
P 		43.4
(-1.7)
M 		70.6
(-0.2)
P 		131.2
(3)
P 		112
B 18.8
(-3)
A 		37.3
(-2.5)
P 		73.3
(-1.5)
P 		237.1
(3)
P 		218
C 22
(-3)
A 		55.7
(-1.9)
P 		75.6
(-1.2)
P 		198.4
(3)
P 		176
avr 19.9
(-3) 		45.5
(-2.1) 		73.2
(-1.1) 		188.9
(3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 13.7
(-3)
A 		108.9
(1.8)
P 		125.6
(2.7)
P 		132
(3)
P 		79.4
(0.3)
P 		74.9
(0.1)
P 		118
B 51.2
(-3)
P 		154.8
(0.7)
P 		151.5
(0.6)
P 		104.5
(-1.1)
P 		180.3
(1.6)
P 		217.8
(3)
P 		167
C 45.2
(-3)
P 		110.3
(0.6)
P 		102.4
(0.2)
P 		116.2
(0.9)
P 		123.9
(1.4)
P 		153.7
(3)
P 		109
avr 36.7
(-3) 		124.7
(1.7) 		126.5
(1.8) 		117.6
(1.3) 		127.9
(1.9) 		148.8
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13382
Sequence Type Exemplar sequence
Representative Public ID Y75B12B.3 NCBI
Target Description Y75B12B.3 /REP_DB=WormBase Gene ID /WP=CE20372 /TR=Q9XWC0 /GB=CAA21759.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074347 NCBI Caenorhabditis elegans Y75B12B.3 (Y75B12B.3) mRNA, complete cds. 11/11 None
SNAP00000027055 ENSEMBL cdna:SNAP chromosome:CEL140:V:15187924:15188846:-1 10/11 None
GENEFINDER00000027072 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15188512:15188846:-1 11/11 None
Y75B12B.3 ENSEMBL cdna:known chromosome:CEL140:V:15188512:15188846:-1 gene:Y75B12B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15188511-15188846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B12B.3
Entrez Gene 190717 Entrez gene
SwissProt Q9XWC0 EMBL-EBI
WormBase CE20372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21759 Hypothetical protein Y75B12B.3 [Caenorhabditis elegans] ref|NP_506748.1| Y75B12B.3 [Caenorhabditis elegans] 1.0E-46
blast CAA21759 Hypothetical protein Y75B12B.3 [Caenorhabditis elegans] ref|NP_506748.1| Y75B12B.3 [Caenorhabditis elegans] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:185413_AT
atgtttcccgagattcttaataatgaaaaacttcgattggagaacattaagaagatctat
gaatcgagcaagtctggttatgaatcggccaaacagttgtatgagcagcaggtcaacaat
ccggaagtttcggatgagcaaaagtcggagaatttggagaaattgaaggagtctcgtggt
gatttggacaacttgcagaagaaaatcgtcgagcttcaggcgaagattgagaacttgagc
aaactcggcgggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTCCCGAGATTCTTAATAATG 573 47 13 Antisense
GATCTATGAATCGAGCAAGTCTGGT 660 419 66 Antisense
GAGCAAGTCTGGTTATGAATCGGCC 611 389 78 Antisense
GAATCGGCCAAACAGTTGTATGAGC 702 327 94 Antisense
GTATGAGCAGCAGGTCAACAATCCG 597 453 111 Antisense
GCAGGTCAACAATCCGGAAGTTTCG 103 311 120 Antisense
GAAGTTTCGGATGAGCAAAAGTCGG 187 323 136 Antisense
TGAAGGAGTCTCGTGGTGATTTGGA 545 573 176 Antisense
TCTCGTGGTGATTTGGACAACTTGC 411 611 184 Antisense
GAAAATCGTCGAGCTTCAGGCGAAG 445 353 213 Antisense
GAACTTGAGCAAACTCGGCGGGCAA 550 349 243 Antisense
Sequence Source Affymetrix Proprietary Database