[Home] | [Total List]

[185412_at]

Description T22B11.2 /REP_DB=WormBase Gene ID /WP=CE17241 /TR=O44563 /GB=AAB94182.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 447
1 2 3 4 range
A 95.9
(-2.7)
P 		495.7
(3)
P 		453.7
(2.4)
P 		72.1
(-3)
A 		424
B 48.4
(-3)
A 		396.9
(2.7)
P 		415.5
(3)
P 		82.7
(-2.4)
A 		367
C 65.2
(-3)
P 		422.2
(2.4)
P 		462.1
(3)
P 		86
(-2.7)
P 		397
avr 69.8
(-3) 		438.3
(2.9) 		443.8
(3) 		80.3
(-2.8) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 90.2
(-3)
P 		291.7
(3)
P 		158.4
(-1)
P 		173
(-0.5)
P 		191.2
(0)
P 		128.2
(-1.9)
P 		202
B 115.7
(-3)
P 		273.7
(3)
P 		168.8
(-1)
P 		231.2
(1.4)
P 		251.3
(2.2)
P 		114.5
(-3)
P 		159
C 110.9
(-2.9)
P 		265.2
(2)
P 		283.5
(2.6)
P 		245.7
(1.4)
P 		295.6
(3)
P 		108.6
(-3)
P 		187
avr 105.6
(-3) 		276.9
(3) 		203.6
(0.4) 		216.6
(0.9) 		246
(1.9) 		117.1
(-2.6) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 34.9
(-1.7)
P 		107.6
(2.4)
P 		118.6
(3)
P 		10.6
(-3)
A 		108
B 15.4
(-3)
A 		98
(3)
P 		96.3
(2.9)
P 		17.6
(-2.8)
A 		83
C 21.6
(-2.7)
P 		121.4
(1.4)
P 		161.1
(3)
P 		14.5
(-3)
P 		147
avr 24
(-2.5) 		109
(2.1) 		125.3
(3) 		14.2
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 16.6
(-3)
P 		103.7
(3)
P 		34.5
(-1.8)
P 		43.9
(-1.1)
P 		57.7
(-0.2)
P 		31.2
(-2)
P 		87
B 40.3
(-3)
P 		91.1
(1.9)
P 		41
(-2.9)
P 		61.2
(-1)
P 		102.1
(3)
P 		42.7
(-2.8)
P 		62
C 41.1
(-2.5)
P 		80.9
(1.5)
P 		72.2
(0.6)
P 		49.4
(-1.7)
P 		95.6
(3)
P 		36.4
(-3)
P 		59
avr 32.7
(-3) 		91.9
(3) 		49.2
(-1.3) 		51.5
(-1.1) 		85.1
(2.3) 		36.8
(-2.6) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11213
Sequence Type Exemplar sequence
Representative Public ID T22B11.2 NCBI
Target Description T22B11.2 /REP_DB=WormBase Gene ID /WP=CE17241 /TR=O44563 /GB=AAB94182.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068214 NCBI Caenorhabditis elegans T22B11.2 (T22B11.2) mRNA, complete cds. 11/11 None
SNAP00000042284 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4688615:4691817:1 11/11 None
GENEFINDER00000042291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4687696:4691817:1 11/11 None
T22B11.2 ENSEMBL cdna:known chromosome:CEL140:IV:4688543:4691817:1 gene:T22B11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4688548-4691823(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B11.2
Entrez Gene 188726 Entrez gene
SwissProt O44563 EMBL-EBI
WormBase CE17241 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94182 Hypothetical protein T22B11.2 [Caenorhabditis elegans] ref|NP_500615.1| T22B11.2 [Caenorhabditis elegans] 0.0
blast CAE58569 Hypothetical protein CBG01734 [Caenorhabditis briggsae] 0.0
blast CAE66096 Hypothetical protein CBG11315 [Caenorhabditis briggsae] 3.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500615.1 1 33-55
T22B11.2 1 33-55
SNAP00000042284 1 12-31
GENEFINDER00000042291 1 85-107
Sequence
Target Sequence 
>C. ELEGANS:185412_AT
agactcgactggctcttttgtatatttataaatatgtgtcaaaggatttcgattggtact
tcaagggtgacgatgacacgtatttaattgtcgaaaacttgcaaagatatctggccactt
tggatccaaacaagccgtactttatcggatatcggttgagtaggcggacggaaacgggat
acaatgcgggaggaagtggctatgtgatgagtcgagaagcgatgcggatattcgcagaaa
aactgttcaatgacaagcaaaaatgcccttaccacgaatgggaagactatgcaatagcgc
aatgtctggcatccgtgggtattgttccattggacagtcgagatgagaagggtaggcaga
gatttcttccgtggagacctgaacaacatttttatgctgatttgacgagaagctttcaga
tggatcctatacaagtttggggccccgcgatctatcacgaaaacttgatcagcatgcatc
atttgcatccagatgaaatccgcctcatcgatggattactgtactcaattgcacgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTCGACTGGCTCTTTTGTATAT 386 71 491 Antisense
GATATCTGGCCACTTTGGATCCAAA 646 425 596 Antisense
GGATCCAAACAAGCCGTACTTTATC 91 511 612 Antisense
GCAAAAATGCCCTTACCACGAATGG 181 317 747 Antisense
GCAATAGCGCAATGTCTGGCATCCG 159 321 781 Antisense
GTCTGGCATCCGTGGGTATTGTTCC 122 471 794 Antisense
GGCAGAGATTTCTTCCGTGGAGACC 158 535 845 Antisense
GATCCTATACAAGTTTGGGGCCCCG 133 379 913 Antisense
CCCCGCGATCTATCACGAAAACTTG 704 259 933 Antisense
TTGCATCCAGATGAAATCCGCCTCA 704 701 973 Antisense
ATTACTGTACTCAATTGCACGTGGA 432 13 1005 Antisense
Sequence Source Affymetrix Proprietary Database