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[185411_at]

Description ZK1248.8 /REP_DB=WormBase Gene ID /WP=CE02908 /TR=Q23416 /GB=AAC71089.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 5.7
(-2.7)
A 		25.1
(3)
A 		4.8
(-3)
A 		9.5
(-1.6)
A 		20
B 9.8
(-2)
A 		45.7
(3)
A 		7.4
(-2.3)
A 		2.2
(-3)
A 		44
C 2.4
(-3)
A 		26.3
(3)
A 		4.5
(-2.5)
A 		9
(-1.3)
A 		24
avr 6
(-2.9) 		32.4
(3) 		5.6
(-3) 		6.9
(-2.7) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 16.1
(-1.2)
A 		14.7
(-1.5)
A 		4.4
(-3)
A 		7.4
(-2.5)
A 		44.3
(3)
A 		9.4
(-2.2)
A 		40
B 2.4
(-2.8)
A 		1.9
(-3)
A 		1.7
(-3)
A 		27.9
(3)
A 		3.3
(-2.6)
A 		5.4
(-2.2)
A 		26
C 20.5
(1.9)
A 		24.3
(3)
A 		4.5
(-2.5)
A 		6.4
(-2)
A 		3.2
(-2.9)
A 		2.7
(-3)
A 		22
avr 13
(1.3) 		13.6
(1.5) 		3.5
(-3) 		13.9
(1.7) 		16.9
(3) 		5.8
(-2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-1.9)
A 		5.5
(3)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		4
B 3.1
(-1.6)
A 		11.3
(3)
A 		1.7
(-2.3)
A 		0.5
(-3)
A 		11
C 0.8
(-3)
A 		7.6
(3)
A 		1.6
(-2.3)
A 		1.5
(-2.4)
A 		7
avr 2
(-2.2) 		8.1
(3) 		1.5
(-2.7) 		1.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3
(-2)
A 		5.2
(-1)
A 		1
(-3)
A 		1.9
(-2.6)
A 		13.4
(3)
A 		2.3
(-2.4)
A 		12
B 0.8
(-2.7)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		7.4
(3)
A 		1.3
(-2.2)
A 		2
(-1.6)
A 		7
C 7.6
(3)
A 		7.4
(2.8)
A 		1.1
(-2.8)
A 		1.3
(-2.6)
A 		1
(-2.9)
A 		0.9
(-3)
A 		7
avr 3.8
(1.1) 		4.4
(1.9) 		0.8
(-3) 		3.5
(0.7) 		5.2
(3) 		1.7
(-1.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5494
Sequence Type Exemplar sequence
Representative Public ID ZK1248.8 NCBI
Target Description ZK1248.8 /REP_DB=WormBase Gene ID /WP=CE02908 /TR=Q23416 /GB=AAC71089.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062751 NCBI Caenorhabditis elegans ZK1248.8 (ZK1248.8) mRNA, complete cds. 11/11 None
SNAP00000041372 ENSEMBL cdna:SNAP chromosome:CEL140:II:5812340:5816368:-1 10/11 None
GENEFINDER00000041390 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5812340:5815446:-1 10/11 None
ZK1248.8 ENSEMBL cdna:known chromosome:CEL140:II:5813867:5814143:-1 gene:ZK1248.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5813863-5814140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.8
Entrez Gene 191546 Entrez gene
SwissProt Q23416 EMBL-EBI
WormBase CE02908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95839 Hypothetical protein R06C7.1 [Caenorhabditis elegans] ref|NP_492045.1| R06C7.1 [Caenorhabditis elegans] sp|Q21770|GCC7_CAEEL Germ cell expressed protein R06C7.1 0.0
blast AAB54129 Hypothetical protein F55A12.1 [Caenorhabditis elegans] ref|NP_491579.1| F55A12.1 [Caenorhabditis elegans] 0.0
blast CAE66929 Hypothetical protein CBG12321 [Caenorhabditis briggsae] 0.0
blast AAC71089 Hypothetical protein ZK1248.8 [Caenorhabditis elegans] ref|NP_495152.1| ZK1248.8 [Caenorhabditis elegans] 2.0E-35
blast AAB54129 Hypothetical protein F55A12.1 [Caenorhabditis elegans] ref|NP_491579.1| F55A12.1 [Caenorhabditis elegans] 5.0E-22
blast CAA95839 Hypothetical protein R06C7.1 [Caenorhabditis elegans] ref|NP_492045.1| R06C7.1 [Caenorhabditis elegans] sp|Q21770|GCC7_CAEEL Germ cell expressed protein R06C7.1 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.5E-34
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 8.2E-23
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185411_AT
aaaatcagcgtgcaactattcctcagcaaactcagtctcagaagacgacgaaggaatgtg
cggttctccctgatgttcgccagagaatcatcatcaagggcaaaactgctgtcaacatca
cagcggagaatgagctcctcaacgctcttggaatcaaagtttattcagagcctttgaagg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCAGCGTGCAACTATTCCTCA 558 133 26 Antisense
CTATTCCTCAGCAAACTCAGTCTCA 470 223 41 Antisense
GCAAACTCAGTCTCAGAAGACGACG 65 319 51 Antisense
GACGAAGGAATGTGCGGTTCTCCCT 452 377 72 Antisense
TCTCCCTGATGTTCGCCAGAGAATC 684 609 90 Antisense
GAGAATCATCATCAAGGGCAAAACT 467 391 108 Antisense
GGGCAAAACTGCTGTCAACATCACA 609 493 123 Antisense
GTCAACATCACAGCGGAGAATGAGC 239 465 136 Antisense
GGAGAATGAGCTCCTCAACGCTCTT 114 519 150 Antisense
GCTCCTCAACGCTCTTGGAATCAAA 277 299 159 Antisense
AAGTTTATTCAGAGCCTTTGAAGGA 359 155 182 Antisense
Sequence Source Affymetrix Proprietary Database